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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
gene expression
Annotation Category
2
Target gene links
1
Gene expression levels
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
scRNA-seq
Available data
2
bed bed3+
1
tsv
1
txt
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
15
CD14-positive monocyte
15
kidney
14
endothelial cell of hepatic sinusoid
12
endothelial cell
12
hepatocyte
11
adipocyte
10
pituitary stalk
9
pancreatic ductal cell
8
fibroblast
8
pancreatic acinar cell
7
dendritic cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic delta cell
7
pancreatic stellate cell
7
smooth muscle cell
6
macrophage
6
skeletal muscle fiber
5
left cardiac atrium
5
mesenchymal stem cell
5
pancreatic endothelial cell
4
liver
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
type I muscle cell
4
type II muscle cell
3
CD8-positive, alpha-beta T cell
3
Schwann cell
3
T cell
3
enterocyte
3
islet of Langerhans
3
keratinocyte
3
myofibroblast cell
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
2
BJAB cell
2
CD4-positive helper T cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
adrenal gland
2
basal cell
2
cardiac muscle cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
fibroblast of lung
2
glial cell
2
goblet cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
mammary epithelial cell
2
natural killer cell
2
neural cell
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
renal principal cell
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
stomach
2
trophoblast cell
2
type B pancreatic cell
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
adipose tissue
1
alternatively activated macrophage
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac ventricle
1
caudate nucleus
1
cell
1
cingulate gyrus
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cortical cell of adrenal gland
1
duodenal mucosa
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
foreskin fibroblast
1
gastrocnemius medialis
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
layer of hippocampus
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
mesendoderm
1
mesothelial cell
1
mid-frontal lobe
1
monocyte
1
mucosa of rectum
1
muscle of leg
1
muscle of trunk
1
myotube
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endocrine cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
placenta
1
proximal tubule cells with injury markers
1
psoas muscle
1
rectum smooth muscle tissue
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
sigmoid colon
1
skeletal muscle
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stomach smooth muscle
1
substantia nigra
1
temporal lobe
1
thymus
1
thyroid follicular cell
1
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
type II pneumocyte
Life stage
1
adult
Date released
2
May, 2021
1
August, 2021
Software used
2
abc
1
r
1
seurat
Lab
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
Project
3
AMP
2
ENCODE
2
T1D
RFA
2
AMP
1
AMP2
biosample_term_name!
Human Mesenchymal Cell derived Osteoblasts
bronchial epithelial cell
lab.title!
AMP-T2D consortium
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP