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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
3
chromatin state
1
variant allelic effects
Annotation Category
4
Gene expression levels
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
RNA-seq
1
DNase-seq
1
scRNA-seq
Available data
bed bed3+
3
bigWig
3
tsv
2
bed bed9
1
bed bed9+
1
txt
File set status
8
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
28
islet of Langerhans
24
heart
23
kidney
21
brain
21
monocyte
21
stomach
18
A549
18
lung
17
epithelial cell of proximal tubule
17
liver
16
adrenal gland
16
glomerular endothelial cell
16
muscle of arm
16
small intestine
15
hepatocyte
15
muscle of leg
15
placenta
14
subcutaneous adipose tissue
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
adipose tissue
12
neural progenitor cell
12
regulatory T cell
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
B cell
10
body of pancreas
10
caudate nucleus
10
endothelial cell
10
heart left ventricle
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
H1-hESC
9
cerebellum
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
induced pluripotent stem cell
9
left kidney
9
macrophage
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
substantia nigra
9
tibial artery
8
ascending aorta
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
6
Ammon's horn
6
K562
6
T cell
6
amygdala
6
anterior cingulate cortex
6
glomerular visceral epithelial cell
6
heart right ventricle
6
hypothalamus
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
neutrophil
6
nucleus accumbens
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
right lobe of liver
6
skeletal muscle tissue
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
alternatively activated macrophage
5
aorta
5
cerebellum (Hemisphere)
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic stellate cell
5
retina
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
angular gyrus
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
right cardiac atrium
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
S-shaped body
3
T follicular helper cell
3
adult endothelial progenitor cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
left renal cortex interstitium
3
mammary gland epithelial cell
3
memory B cell
3
naive B cel
3
naive T cell
3
neurosphere
3
osteoblast
3
pancreas
3
pancreatic quiescent stellate cell
3
prostate gland
3
right renal cortex interstitium
3
smooth muscle cell
3
thoracic aorta
3
upper lobe of left lung
3
uterus
2
22Rv1
2
Brodmann (1909) area 46
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipose-derived stem cell
2
astrocyte
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cingulate gyrus
Life stage
3
adult
2
unknown
1
child
Date released
2
May, 2021
2
September, 2022
1
August, 2021
1
February, 2020
1
May, 2020
1
May, 2022
Software used
4
r
3
chromhmm
1
deltasvm
1
seurat
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
left cardiac atrium
files.file_type!
bed bed3+
Showing 8 of 8 results
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Download
FileSet
DSR584RLR
released
Annotation file set
: Chromatin states for BSS01574 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR816QKV
released
Annotation file set
: Chromatin states for BSS01573 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR578SMV
released
Annotation file set
: Variant allelic effects of skeletal muscle myoblast ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846HCI
released
Annotation file set
: Gene expression levels of Skeletal muscle myoblast cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP