Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
gene expression
1
accessible chromatin
Annotation Category
6
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
scRNA-seq
3
snDropSeq
1
ATAC-seq
Available data
6
tsv
3
txt
1
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
128
monocyte
54
common myeloid progenitor, CD34-positive
46
CD8-positive, alpha-beta T cell
36
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
26
regulatory T cell
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
21
T-helper 17 cell
20
mononuclear cell
18
natural killer cell
18
trophoblast cell
17
T cell
17
T-helper 2 cell
17
osteoblast
16
fibroblast of lung
16
foreskin fibroblast
16
skeletal muscle myoblast
15
macrophage
15
neutrophil
13
CD4-positive, alpha-beta T cell
13
neurosphere
12
fibroblast of dermis
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
fibroblast
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
9
skeletal muscle satellite cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
smooth muscle cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
kidney interstitial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
skin fibroblast
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
skeletal muscle fiber
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
memory B cell
5
mesangial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
leukocyte
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Ishikawa
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
erythroid cell
3
kidney cell
3
kidney resident macrophage
3
mammary epithelial cell
3
mammary stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic quiescent stellate cell
3
pericyte cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
basal cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
effector memory CD4-positive, alpha-beta T cell
2
erythroid progenitor cell
2
glial cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
mantle cell lymphoma cell
2
myeloid dendritic cell
2
neural cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
somatic muscle myotube
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
erythroid lineage cell
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
head and neck neoplasia
1
helper T cell
1
immature natural killer cell
1
induced T-regulatory cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
Organ
7
kidney
Life stage
4
adult
3
fetal
Date released
6
February, 2021
1
August, 2021
Software used
6
r
1
macs
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
2
T1D
RFA
6
AMP
1
AMP2
organ_slims!
epithelium
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR611DVH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924MTE
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795NZZ
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Stroma cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR661ZJU
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of IPC from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR072UTY
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ICb from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924ZRB
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ICa from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708CXZ
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP