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Schema
Citing CMDGA
Clear Filters
Annotation type
1
histone modifications
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
107
monocyte
42
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
27
CD14-positive monocyte
26
B cell
23
CD4-positive, alpha-beta memory T cell
17
hepatocyte
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
14
mononuclear cell
14
osteoblast
14
regulatory T cell
14
trophoblast cell
13
fibroblast of lung
13
mammary epithelial cell
12
T-helper 1 cell
12
endothelial cell
12
natural killer cell
12
skeletal muscle myoblast
11
T cell
11
keratinocyte
10
CD4-positive, alpha-beta T cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
endothelial cell of hepatic sinusoid
10
neurosphere
9
fibroblast
9
fibroblast of dermis
9
neutrophil
8
dermis blood vessel endothelial cell
8
mammary gland epithelial cell
8
retinal pigment epithelial cell
cardiac muscle cell
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney tubule cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
pancreatic ductal cell
7
smooth muscle cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
astrocyte
6
choroid plexus epithelial cell
6
epithelial cell of proximal tubule
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
macrophage
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
pancreatic beta cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
5
cardiac fibroblast
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
epithelial cell of esophagus
5
foreskin melanocyte
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mesenchymal stem cell
5
pancreatic alpha cell
5
skeletal muscle cell
5
skeletal muscle satellite cell
5
skin fibroblast
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
erythroblast
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
glutamatergic neuron
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic delta cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
brain pericyte
3
enterocyte
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
kidney capillary endothelial cell
3
mast cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
pancreatic acinar cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
adipocyte
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
gamma-delta T cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
mature neutrophil
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
2
naive regulatory T cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
pancreatic polypeptide-secreting cell
2
pericyte cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
somatic muscle myotube
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
Organ
2
pancreas
Date released
1
February, 2021
1
February, 2024
Software used
1
deltasvm
1
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
biosample_term_name!
cardiac muscle cell
Showing 2 of 2 results
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Download
FileSet
DSR590LQI
released
Annotation file set
: Histone modifications annotation for Pancreas Pancreatic_endocrine_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR869WNA
released
Annotation file set
: Variant allelic effects annotation of Alpha/Beta/Delta cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP