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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
2
variant allelic effects
Annotation Category
2
Gene expression levels
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
2
snDropSeq
Available data
2
bed bed3+
2
tsv
2
txt
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
128
monocyte
54
common myeloid progenitor, CD34-positive
46
CD8-positive, alpha-beta T cell
39
B cell
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
31
CD14-positive monocyte
26
regulatory T cell
24
endothelial cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
natural killer cell
20
endothelial cell of umbilical vein
20
mononuclear cell
19
foreskin keratinocyte
18
macrophage
18
trophoblast cell
17
T cell
17
T-helper 2 cell
17
osteoblast
16
fibroblast of lung
16
foreskin fibroblast
16
skeletal muscle myoblast
15
neutrophil
14
endothelial cell of hepatic sinusoid
14
fibroblast
14
pancreatic ductal cell
13
CD4-positive, alpha-beta T cell
13
keratinocyte
13
mammary epithelial cell
13
neurosphere
12
bronchial epithelial cell
12
fibroblast of dermis
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic beta cell
11
glomerular visceral epithelial cell
11
mammary gland epithelial cell
11
pancreatic alpha cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
smooth muscle cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mast cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
7
skin fibroblast
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
skeletal muscle fiber
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
5
adipocyte
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
memory B cell
5
mesangial cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pericyte cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Ishikawa
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
3
mammary stem cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
basal cell
2
cardiac muscle myoblast
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of coronary artery
2
erythroid progenitor cell
2
glial cell
2
goblet cell
Organ
4
vasculature
Life stage
2
adult
Date released
2
February, 2021
2
February, 2024
Software used
2
deltasvm
2
r
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
organ_slims!
adipose tissue
Showing 4 of 4 results
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Download
FileSet
DSR612XXH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Vascular Smooth Muscle Cells and pericytes from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR033OJN
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Vascular Smooth Muscle Cells and pericytes from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR963XVP
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR265TNH
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP