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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
1
binding sites
Annotation Category
4
Target gene links
1
cis-regulatory elements
Annotation type Category
4
snATAC-seq
1
ChIP-seq
Available data
5
bed bed3+
3
bigBed narrowPeak
3
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
1
hg18
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
1
HepG2
1
cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
Organ
3
epithelium
3
pancreas
1
liver
Life stage
4
adult
Date released
2
February, 2021
1
August, 2021
1
January, 2022
1
September, 2022
Software used
2296
macs
2215
r
1035
chromhmm
838
encode-ccres
139
abc
136
deltasvm
114
qTLtools
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
12
deeptools
12
deseq2
12
matrix-eQTL
12
umitools
11
rasqual
9
salmon
6
eigenmt
5
unknown
4
cicero
3
fastqtl
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
28
T1D
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR366OIY
released
Annotation file set
: Binding sites of ChREBP, TF for liver lipogenesis, in HepG2 cells(PMID:21811631)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR751QTO
released
Annotation file set
: Co-accessibility linking chromatin sites across human cell snATAC-seq
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP