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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
27
endothelial cell
20
fibroblast
19
pericyte cell
17
smooth muscle cell
endothelial cell of hepatic sinusoid
15
kidney
15
macrophage
12
excitatory neuron
12
hepatocyte
9
astrocyte
7
induced pluripotent stem cell
7
skeletal muscle fiber
6
T cell
6
colon epithelial cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
B Cell
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cortical cell of adrenal gland
5
erythroblast
5
inhibitory neuron
5
pancreatic ductal cell
4
B cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
adipocyte
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
glial cell
3
megakaryocyte
3
mesothelial cell
3
oligodendrocyte precursor cell
3
schwann cell
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
monocyte
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
B-1 B cell
1
B-2 B cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
alternatively activated macrophage
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
Date released
3
November, 2021
1
April, 2020
Software used
3
macs
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
AMP
3
ENCODE3
1
LungMap2
award.rfa!
AMP
biosample_term_name!
endothelial cell of hepatic sinusoid
regulatory T cell
organ_slims!
artery
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE