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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
26
endothelial cell
23
fibroblast
21
pericyte cell
18
smooth muscle cell
17
macrophage
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
9
astrocyte
8
hepatocyte
8
kidney
7
B cell
7
endothelial cell of lymphatic vessel
6
T cell
6
colon epithelial cell
6
natural killer cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
type II pneumocyte
5
cortical cell of adrenal gland
5
endocardial cell
5
erythroblast
5
inhibitory neuron
5
mast cell
5
pancreatic ductal cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
memory B cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
CD4-positive helper T cell
3
basal cell
3
ciliated cell
3
club cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
megakaryocyte
3
mesenchymal stem cell
3
mesothelial cell
3
oligodendrocyte precursor cell
3
schwann cell
2
CD4-positive, alpha-beta T cell
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
hepatic stellate cell
2
intestinal tuft cell
2
luteal cell
2
mammary gland epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
monocyte
2
myoepithelial cell
2
myofibroblast cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
cartilage tissue
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dendritic cell
1
endothelial cell of artery
1
enteroendocrine cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glomerular visceral epithelial cell
1
goblet cell
1
hepatoblast
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lung neuroendocrine cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
metanephros
1
neural cell
1
neuroendocrine cell
1
neuron
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
purified protein and synthetic DNA oligo binding assay
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
sympathetic neuron
1
trophoblast giant cell
1
undifferentiated ESC (H9 cell line)
1
ureteric bud
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
AMP
2
ENCODE3
award.rfa!
AMP
Showing 2 of 2 results
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Download
FileSet
DSR550FOW
released
Annotation file set
: Target gene predictions of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR058FXX
released
Annotation file set
: Accessible chromatin annotation of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE