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Citing CMDGA
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Annotation type
4
target gene predictions
1
gene expression
Annotation Category
4
Target gene links
1
Gene expression levels
Annotation type Category
3
ATAC-seq
1
scRNA-seq
1
snATAC-seq
Available data
4
bed bed3+
1
tsv
1
txt
File set status
5
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
13
endothelial cell
10
pericyte cell
9
smooth muscle cell
8
kidney
7
induced pluripotent stem cell
6
hepatocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
4
cartilage tissue
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
macrophage
4
type I muscle cell
4
type II muscle cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
colon epithelial cell
3
mesenchymal stem cell
3
natural killer cell
3
pancreatic delta cell
3
type II pneumocyte
2
EndoC_BH1
2
articular chondrocyte
2
astrocyte
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
cortical cell of adrenal gland
2
endothelial cell of lymphatic vessel
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
gabaergic neuron
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
memory B cell
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
type B pancreatic cell
2
type I pneumocyte
1
B cell
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
T cell
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
cardiac endothelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
endocardial cell
1
endothelial cell of artery
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of proximal tubule
1
erythrocyte
1
fat cell
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
glial cell
1
glomerular endothelial cell
1
granular cell of epidermis
1
inflammatory macrophage
1
intestinal tuft cell
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
leukocyte
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
mesothelial cell
1
microglial cell
1
monocyte
1
myoepithelial cell
1
myofibroblast cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
plasmacytoid dendritic cell
1
purified protein and synthetic DNA oligo binding assay
1
regular atrial cardiac myocyte
1
regulatory T cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
synovial joint
1
thyroid follicular cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
undifferentiated ESC (H9 cell line)
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
2
epithelium
2
skin of body
Life stage
1
adult
Date released
3
November, 2021
1
August, 2021
1
January, 2021
Software used
macs
3
abc
1
cicero
1
r
1
seurat
Lab
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
3
ENCODE
1
AMP
1
T1D
RFA
AMP
3
ENCODE3
1
AMP2
1
T1D
award.rfa!
AMP
software_used.software.name!
macs
Showing 5 of 5 results
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR681TKD
released
Annotation file set
: Target gene predictions of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR385FIQ
released
Annotation file set
: Target gene predictions of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D