Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
23
fibroblast
21
pericyte cell
19
smooth muscle cell
18
macrophage
12
excitatory neuron
9
astrocyte
7
B cell
7
natural killer cell
7
skeletal muscle fiber
6
T cell
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
erythroblast
5
inhibitory neuron
5
mast cell
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
memory B cell
4
mesenchymal stem cell
4
smooth muscle cell of the esophagus
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
basal cell
3
ciliated cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
megakaryocyte
3
oligodendrocyte precursor cell
3
schwann cell
2
CD4-positive, alpha-beta T cell
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
articular chondrocyte
2
colon goblet cell
2
conventional dendritic cell
2
dendritic cell
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
hepatic stellate cell
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
monocyte
2
myofibroblast cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
neuronal stem cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
stellate neuron
2
stromal cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
B-1 B cell
1
B-2 B cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
hepatoblast
1
inflammatory macrophage
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
metanephros
1
neuron
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
proximal tubule cells with injury markers
1
retinal bipolar neuron
1
sympathetic neuron
1
trophoblast giant cell
Date released
2
January, 2021
Software used
1
cicero
1
macs
Lab
2
Kyle Gaulton, UCSD
Project
2
T1D
RFA
AMP
2
T1D
award.rfa!
AMP
organ_slims!
epithelium
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR059MDJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR260WKD
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D