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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
1
accessible chromatin
1
target gene predictions
Annotation Category
3
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
3
single cell RNA-seq
1
ATAC-seq
1
snATAC-seq
Available data
3
tsv
2
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
27
endothelial cell
20
fibroblast
19
pericyte cell
17
smooth muscle cell
16
endothelial cell of hepatic sinusoid
15
kidney
15
macrophage
12
excitatory neuron
12
hepatocyte
9
astrocyte
7
induced pluripotent stem cell
7
skeletal muscle fiber
6
T cell
6
colon epithelial cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
6
type II pneumocyte
5
CD8-positive, alpha-beta T cell
5
cortical cell of adrenal gland
5
erythroblast
5
inhibitory neuron
5
pancreatic ductal cell
4
B cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive helper T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adipocyte
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
glial cell
3
megakaryocyte
3
mesothelial cell
3
oligodendrocyte precursor cell
3
schwann cell
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
monocyte
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
B-1 B cell
1
B-2 B cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
alternatively activated macrophage
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glomerular endothelial cell
Disease term
1
acute kidney failure
1
chronic kidney disease
Organ
3
epithelium
3
kidney
Life stage
3
adult
Date released
3
September, 2023
2
November, 2021
Software used
3
r
deseq2
1
abc
1
macs
Lab
3
KPMP
2
Bing Ren, UCSD
Project
3
KPMP
2
ENCODE
RFA
AMP
3
KPMP
2
ENCODE3
award.rfa!
AMP
software_used.software.name!
deseq2
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR451WJD
released
Annotation file set
: Gene expression annotation of Proximal Tubule Epithelial Cell Segment 1 and 2 of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR421TFJ
released
Annotation file set
: Gene expression annotation of Proximal Tubule Epithelial Cell Segment 1 and 2 of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR142JWL
released
Annotation file set
: Gene expression annotation of Proximal Tubule Epithelial Cell Segment 1 and 2 of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR666BUF
released
Annotation file set
: Target gene predictions of Naive T cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR681CET
released
Annotation file set
: Accessible chromatin annotation of Naive T cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE