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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
1
Gene expression levels
Annotation type Category
6
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
7
bed bed3+
2
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
14
endothelial cell of hepatic sinusoid
10
endothelial cell
10
hepatocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
4
macrophage
4
mesenchymal stem cell
4
natural killer cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle fiber
4
smooth muscle cell
4
type I muscle cell
4
type II muscle cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
articular chondrocyte
2
capillary endothelial cell
2
conventional dendritic cell
2
extracellular matrix secreting cell
2
glial cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
renal principal cell
2
skeletal muscle satellite cell
2
stellate neuron
1
B cell
1
B-1 B cell
1
B-2 B cell
1
T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
basal cell
1
ciliated cell
1
club cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of proximal tubule
1
erythrocyte
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
myofibroblast cell
1
neuroendocrine cell
1
pericyte cell
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
type I pneumocyte
1
type II pneumocyte
Organ
4
epithelium
4
pancreas
Date released
4
January, 2021
3
February, 2024
1
October, 2022
Software used
3
macs
2
cicero
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
Bing Ren, UCSD
4
Kyle Gaulton, UCSD
4
Stephen Parker, UMich
Project
4
AMP
4
T1D
RFA
AMP
4
AMP2
4
T1D
award.rfa!
AMP
lab.title!
Bing Ren, UCSD
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR727SYE
released
Annotation file set
: Expression QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR309RZR
released
Annotation file set
: Cell type chromatin broad peaks and bw of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR873DHZ
released
Annotation file set
: Cell type gene expression mean TPM and bw of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR821QOK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR247PPG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D