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Embeddings type
4
Accessible chromatin
Gene expression
Embeddings Category
4
umap
Underlying Assay
3
10X snATAC-seq
1
sciATAC-seq
Available data
3
h5ad
2
mtx
1
tsv
File set status
4
released
Organism
2
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
2
islet of Langerhans
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
tissues
Tissue term
2
pancreas
1
blood
1
lung
1
tissues
Organ
2
pancreas
1
blood
1
bodily fluid
1
lung
Date released
1
August, 2021
1
November, 2021
1
October, 2024
1
September, 2021
Lab
1
Bing Ren, UCSD
1
Franck Mauvais-Jarvis Lab
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
1
ENCODE
1
LungMap
1
T1D
1
community
RFA
AMP
1
ENCODE3
1
LungMap2
1
T1D
1
community
award.rfa!
AMP
embeddings_type!
Gene expression
Showing 4 of 4 results
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FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D