Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Embeddings type
4
Accessible chromatin
3
Gene expression
Embeddings Category
7
umap
Underlying Assay
2
10X snATAC-seq
1
10X scRNA-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
5
h5ad
3
mtx
1
rds
1
tsv
File set status
7
released
Organism
4
Homo sapiens
Biosample type
6
tissue
Biosample term
2
islet of Langerhans
2
lung
2
skeletal muscle
1
tissues
Tissue term
2
lung
2
pancreas
2
skeletal muscle tissue
1
tissues
Organ
2
lung
2
musculature of body
2
pancreas
Life stage
2
adult
Date released
2
July, 2025
2
October, 2024
2
September, 2021
1
November, 2021
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
2
Stephen Parker, UMich
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
2
AMP
2
LungMap
2
community
1
ENCODE
RFA
AMP
2
AMP2
2
LungMap2
2
community
1
ENCODE3
award.rfa!
AMP
lab.title!
Kyle Gaulton, UCSD
Showing 7 of 7 results
table-tab-icon
matrix-icon
FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap