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Embeddings type
3
Accessible chromatin
3
Gene expression
Embeddings Category
6
umap
Underlying Assay
2
10X snATAC-seq
1
10X snRNA-seq
Available data
5
h5ad
2
rds
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
1
primary cell
Biosample term
2
lung
2
skeletal muscle
1
heart
1
islet of Langerhans
1
pancreas
1
peripheral blood mononuclear cell
Tissue term
2
lung
2
skeletal muscle tissue
1
blood
1
heart
1
pancreas
Organ
2
lung
2
musculature of body
1
blood
1
bodily fluid
1
heart
1
pancreas
Life stage
2
adult
Date released
2
July, 2025
2
September, 2021
1
August, 2021
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
Kyle Gaulton, UCSD
2
Stephen Parker, UMich
2
Xin Sun, UCSD
Project
3
AMP
2
LungMap
1
T1D
RFA
AMP
3
AMP2
2
LungMap2
1
T1D
award.rfa!
AMP
Showing 6 of 6 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D