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Embeddings type
4
Gene expression
2
Accessible chromatin
Embeddings Category
6
umap
Underlying Assay
1
10X scRNA-seq
1
10X snATAC-seq
1
10X snRNA-seq
Available data
4
h5ad
2
rds
1
tsv
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
6
islet of Langerhans
6
skeletal muscle
5
heart
5
liver
5
pancreas
4
artery
3
kidney
3
lung
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
2
subcutaneous adipose tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
hypothalamus
1
immune system
1
large intestine
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral abdominal adipose tissue
1
visceral fat
Tissue term
4
skeletal muscle tissue
1
muscle
1
skeletal muscle
Organ
6
musculature of body
Life stage
5
adult
Date released
2
April, 2025
2
July, 2025
1
February, 2025
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
Project
6
AMP
RFA
4
AMP
2
AMP2
award.rfa!
ENCODE3
Showing 6 of 6 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR759180
released
Embeddings file set
: Single cell reference map of human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP