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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
129
monocyte
69
heart
67
stomach
60
HeLa-S3
55
brain
52
lung
51
H1-hESC
51
muscle of arm
50
kidney
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
45
CD8-positive, alpha-beta T cell
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
islet of Langerhans
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
34
right lung
33
K562
33
hematopoietic multipotent progenitor cell
32
B cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spleen
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
heart left ventricle
25
adipose tissue
23
CD4-positive, alpha-beta memory T cell
23
hepatocyte
23
regulatory T cell
21
EndoC_BH1
21
tibial nerve
20
MCF-7
20
body of pancreas
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pancreatic ductal cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
HFFc6
19
T-helper 1 cell
19
glomerular endothelial cell
18
foreskin keratinocyte
18
pancreas
17
T-helper 17 cell
17
adipocyte
17
caudate nucleus
17
coronary artery
17
ovary
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
macrophage
15
CD8-positive, alpha-beta memory T cell
15
H9
15
cardiac muscle cell
15
foreskin fibroblast
15
natural killer cell
15
omental fat pad
15
psoas muscle
15
substantia nigra
15
transverse colon
14
HepG2
14
gastrocnemius medialis
14
mononuclear cell
14
osteoblast
14
testis
14
thyroid gland
14
tibial artery
13
GM12878
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
frontal cortex
13
heart right ventricle
13
keratinocyte
13
neutrophil
13
putamen
13
retinal pigment epithelial cell
13
skeletal muscle tissue
13
upper lobe of left lung
12
T cell
12
ascending aorta
12
cerebellum
12
endothelial cell
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic beta cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
embryonic stem cell
11
mammary epithelial cell
11
mesenchymal stem cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
skeletal muscle myoblast
10
CD4-positive, alpha-beta T cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
left renal cortex interstitium
10
mammary gland epithelial cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of lung
9
glomerular visceral epithelial cell
9
induced pluripotent stem cell
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
pancreatic delta cell
8
pituitary stalk
8
trophoblast
7
A549
7
HAP-1
7
HT-29
7
Jurkat
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast
7
fibroblast of dermis
7
hepatic stellate cell
7
kidney tubule cell
7
lower leg skin
7
mesendoderm
7
pancreatic stellate cell
7
temporal lobe
7
thoracic aorta
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
NAMALWA cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
skin fibroblast
6
smooth muscle cell of the coronary artery
6
tongue
6
uterus
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
Disease term
lung epithelial-myoepithelial carcinoma
Organ
7
lung
Life stage
3
adult
Date released
5
February, 2021
1
June, 2020
1
May, 2021
Software used
3
encode-ccres
3
macs
1
abc
chromhmm
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
duodenal mucosa
disease_term_name!
lung epithelial-myoepithelial carcinoma
software_used.software.name!
chromhmm
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR641NTB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496BBN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885NAO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP