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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
2
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
2
bed bed9+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
cell line
6
primary cell
Biosample term
128
monocyte
90
heart
86
stomach
73
brain
68
lung
67
muscle of arm
66
kidney
63
small intestine
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
49
liver
48
thymus
47
neural progenitor cell
46
CD8-positive, alpha-beta T cell
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
40
B cell
40
renal cortex interstitium
renal pelvis
40
retina
36
left kidney
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
32
adipose tissue
31
CD14-positive monocyte
31
spinal cord
26
regulatory T cell
25
hepatocyte
25
tibial nerve
24
adipocyte
24
body of pancreas
23
T-helper 1 cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pancreas
21
coronary artery
21
ovary
21
subcutaneous adipose tissue
20
T-helper 17 cell
20
endothelial cell of umbilical vein
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
heart right ventricle
19
natural killer cell
19
pancreatic ductal cell
19
right atrium auricular region
18
gastrocnemius medialis
18
omental fat pad
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
T cell
17
T-helper 2 cell
17
muscle of trunk
17
osteoblast
17
testis
16
ascending aorta
16
cerebellum
16
chorionic villus
16
fibroblast of lung
16
foreskin fibroblast
16
frontal cortex
16
layer of hippocampus
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
endocrine pancreas
15
mesenchymal stem cell
15
neutrophil
15
retinal pigment epithelial cell
14
Peyer's patch
14
cardiac muscle cell
14
embryonic stem cell
14
endothelial cell
14
mammary gland epithelial cell
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
aorta
13
keratinocyte
13
macrophage
13
mammary epithelial cell
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
bronchial epithelial cell
12
fibroblast of dermis
12
left cardiac atrium
12
left renal cortex interstitium
12
left renal pelvis
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic beta cell
11
breast epithelium
11
cardiomyocytes
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
fibroblast
11
pancreatic acinar cell
11
right renal pelvis
10
angular gyrus
10
chorion membrane
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
esophagus
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lower leg skin
10
neuronal stem cell
10
pancreatic alpha cell
10
pancreatic delta cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
epithelial cell of prostate
9
extended pluripotent stem (EPS) cells
9
eye
9
fibroblast of cardiac tissue
9
foreskin melanocyte
9
induced pluripotent stem cell
9
mature neutrophil
9
mesendoderm
9
mucosa of rectum
9
naive T cell
9
parathyroid adenoma
9
tongue
9
vagina
8
T-cell acute lymphoblastic leukemia
8
astrocyte
8
cardiomyocytes (cardiac muscle cell)
8
endodermal cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
globus pallidus
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
limb
8
midbrain
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
occipital lobe
8
pancreatic stellate cell
8
progenitor cell of endocrine pancreas
8
right lobe of liver
7
CD1c-positive myeloid dendritic cell
7
amygdala
7
choroid plexus epithelial cell
7
gastroesophageal sphincter
7
hypothalamus
7
kidney epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesodermal cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
neuroblastoma cell line
7
nucleus accumbens
7
renal cortical epithelial cell
7
skeletal muscle satellite cell
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
T-cell
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
gamma-delta T cell
6
kidney interstitial cell
6
medulla oblongata
6
middle frontal gyrus
6
muscle cell
6
pulmonary artery endothelial cell
6
right cardiac atrium
6
skin fibroblast
6
superior temporal gyrus
6
urinary bladder
Life stage
2
child
Date released
2
May, 2022
2
October, 2022
1
May, 2020
1
May, 2021
Software used
4
chromhmm
1
abc
1
chicago
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
5
ENCODE3
biosample_term_name!
renal pelvis
biosample_type!
cell line
Showing 6 of 6 results
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Download
FileSet
DSR135IUV
released
Annotation file set
: Binding sites annotation for erythroblast (PBDEFetal) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273PAT
released
Annotation file set
: Binding sites annotation for erythroblast (PBDE) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855DIH
released
Annotation file set
: Chromatin state of erythroblast from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR640XWO
released
Annotation file set
: Chromatin state of erythroblast from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR876RQU
released
Annotation file set
: enhancer-gene predicton of erythroblast-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR617WXQ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of erythroblast
Lab:
AMP-T2D consortium
Project:
AMP