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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
129
monocyte
90
heart
86
stomach
73
brain
68
lung
67
muscle of arm
66
kidney
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
49
liver
48
thymus
46
CD8-positive, alpha-beta T cell
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
B cell
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
26
MCF-7
26
regulatory T cell
25
hepatocyte
25
tibial nerve
24
body of pancreas
23
T-helper 1 cell
23
adipocyte
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pancreas
21
EndoC_BH1
21
subcutaneous adipose tissue
20
T-helper 17 cell
20
breast cancer cell
20
coronary artery
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pancreatic ductal cell
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
natural killer cell
19
right atrium auricular region
18
HFFc6
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
cardiac muscle cell
17
embryonic stem cell
17
keratinocyte
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
GM12878
16
T cell
16
chorionic villus
16
fibroblast of lung
16
layer of hippocampus
16
macrophage
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
ascending aorta
15
cerebellum
15
frontal cortex
15
mesenchymal stem cell
15
neutrophil
15
retinal pigment epithelial cell
14
H9
14
endocrine pancreas
14
mammary gland epithelial cell
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
endothelial cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
breast epithelium
11
epithelial cell of prostate
11
left cardiac atrium
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lymphocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
fibroblast
9
hepatic stellate cell
9
induced pluripotent stem cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic delta cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
Date released
2
May, 2020
2
November, 2019
Software used
2
deltasvm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
hippocampal neuron
Showing 4 of 4 results
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Download
FileSet
DSR181VXG
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835LQY
released
Annotation file set
: Genetic variants with deltaSVM predictions in beta cell iPS-derived pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR163OWK
released
Annotation file set
: Induced Pluripotent Stem Cell derived from fibroblasts accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR003GNM
released
Annotation file set
: Induced Pluripotent Stem Cell derived from beta-cells accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP