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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
113
monocyte
43
CD8-positive, alpha-beta T cell
28
common myeloid progenitor, CD34-positive
23
CD14-positive monocyte
18
B cell
16
endothelial cell of umbilical vein
14
CD4-positive, alpha-beta memory T cell
14
foreskin fibroblast
13
CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
osteoblast
13
regulatory T cell
12
macrophage
11
foreskin keratinocyte
11
hepatocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
skeletal muscle myoblast
10
T-helper 1 cell
10
fibroblast of lung
10
natural killer cell
10
trophoblast cell
9
fibroblast
9
keratinocyte
9
mature neutrophil
8
CD8-positive, alpha-beta memory T cell
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
bronchial epithelial cell
8
mononuclear cell
8
pancreatic ductal cell
7
cardiac muscle cell
7
endothelial cell
7
neurosphere
7
retinal pigment epithelial cell
6
T-cell
6
dermis blood vessel endothelial cell
6
erythroblast
6
fibroblast of dermis
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
olfactory receptor cell
6
pancreatic beta cell
6
peripheral blood mononuclear cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
alternatively activated macrophage
5
astrocyte
5
choroid plexus epithelial cell
5
epithelial cell of prostate
5
epithelial cell of proximal tubule
5
glomerular endothelial cell
5
hepatic stellate cell
5
kidney glomerular epithelial cell
5
kidney tubule cell
5
mammary gland epithelial cell
5
pancreatic alpha cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
epithelial cell of esophagus
4
fibroblast of breast
4
foreskin melanocyte
4
glutamatergic neuron
4
inflammatory macrophage
4
kidney epithelial cell
4
myoepithelial cell of mammary gland
4
myofibroblast cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the brain vasculature
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
blood cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
brain pericyte
3
enterocyte
3
erythroid cell
3
fibroblast of cardiac tissue
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
glomerular visceral epithelial cell
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
lung microvascular endothelial cell
3
mast cell
3
mesenchymal stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
naive T cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
skin fibroblast
3
smooth muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
astrocyte of the spinal cord
2
basal cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
erythroid progenitor cell
2
fibroblast of gingiva
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
2
naive regulatory T cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
pancreatic polypeptide-secreting cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
skeletal muscle fiber
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
somatic muscle myotube
2
stromal cell of bone marrow
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adipocyte
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
fat cell
Organ
2
connective tissue
2
mouth
Life stage
2
unknown
Date released
1
February, 2021
1
September, 2022
Software used
r
1
chromhmm
1
encode-ccres
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
1
AMP2
software_used.software.name!
r
Showing 2 of 2 results
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Download
FileSet
DSR302IPT
released
Annotation file set
: Chromatin states for BSS00338 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR354XIS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of gingiva
Lab:
AMP-T2D consortium
Project:
AMP