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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
85
heart
73
brain
67
muscle of arm
64
stomach
62
lung
60
placenta
58
muscle of leg
57
kidney
56
large intestine
55
small intestine
54
H1-hESC
54
muscle of back
53
HeLa-S3
52
left lung
48
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
35
spinal cord
27
CD8-positive, alpha-beta T cell
27
islet of Langerhans
27
monocyte
23
CD4-positive, alpha-beta memory T cell
23
liver
22
K562
21
EndoC_BH1
20
breast cancer cell
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
foreskin keratinocyte
19
heart left ventricle
18
trophoblast cell
17
T-helper 17 cell
17
keratinocyte
17
muscle of trunk
17
retina
16
H9
16
HepG2
16
chorionic villus
15
macrophage
15
osteoblast
15
pancreatic ductal cell
14
heart right ventricle
14
regulatory T cell
13
B cell
13
bronchial epithelial cell
13
neurosphere
13
spleen
12
common myeloid progenitor, CD34-positive
12
hepatocyte
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
11
GM12878
11
epithelial cell of prostate
11
fibroblast of lung
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
SK-N-SH
10
choroid plexus epithelial cell
10
gastric cancer cell
10
lymphocyte
10
neutrophil
10
right renal cortex interstitium
10
skeletal muscle myoblast
10
trophoblast
9
HEK293
9
IMR-90
9
NAMALWA cell
9
SK-N-DZ
9
T-helper 1 cell
9
T-helper 2 cell
9
cardiac muscle cell
9
endothelial cell
9
fibroblast of cardiac tissue
9
liposarcoma
9
mammary epithelial cell
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
PC-9
8
SK-N-MC
8
fibroblast cell line
8
fibroblast of dermis
8
limb
8
ovary
8
pituitary stalk
8
testis
7
AG04449 cell
7
AG04450 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD8-positive, alpha-beta memory T cell
7
CMK
7
Jurkat
7
MCF-7
MG63
7
NT2-D1 cell
7
T cell
7
WERI-Rb-1
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
eye
7
fibroblast
7
fibroblast of pulmonary artery
7
glomerular endothelial cell
7
pancreas
7
pancreatic acinar cell
7
pancreatic beta cell
7
skeletal muscle tissue
7
skin fibroblast
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
Rh-4 cell
6
WI38
6
adipose tissue
6
astrocyte
6
diffuse intrinsic pontine glioma
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular visceral epithelial cell
6
iPSC derived cell line
6
psoas muscle
6
retinal pigment epithelial cell
5
A549
5
A673
5
CD4-positive, alpha-beta T cell
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
L1-S8
5
Panc1
5
acute myeloid leukemia
5
coronary artery
5
esophageal adenocarcinoma
5
kidney epithelial cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
pancreatic stellate cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skin of body
5
smooth muscle cell of the coronary artery
5
umbilical cord
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
COLO205
4
Caco-2 cell
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
HUES48
4
KOPT-K1
4
L1-S8R
Organ
2
connective tissue
Life stage
adult
1
unknown
Date released
1
March, 2020
1
May, 2022
Software used
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
4
AMP2
2
AMP
biosample_term_name!
MG63
biosample_type!
in vitro differentiated cells
relevant_life_stage!
adult
Showing 2 of 2 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP