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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
129
monocyte
64
HeLa-S3
62
A549
54
common myeloid progenitor, CD34-positive
50
H1-hESC
46
CD8-positive, alpha-beta T cell
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
41
K562
41
liver
40
B cell
38
neural progenitor cell
33
stomach
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
30
adrenal gland
30
spleen
28
retina
26
MCF-7
26
heart left ventricle
26
regulatory T cell
25
tibial nerve
24
body of pancreas
23
T-helper 1 cell
23
adipocyte
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pancreas
21
EndoC_BH1
21
hepatocyte
21
subcutaneous adipose tissue
20
T-helper 17 cell
20
breast cancer cell
20
coronary artery
20
glomerular endothelial cell
20
mononuclear cell
20
pancreatic ductal cell
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart
19
natural killer cell
19
right atrium auricular region
18
HFFc6
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
embryonic stem cell
17
keratinocyte
17
omental fat pad
17
osteoblast
16
GM12878
16
T cell
16
fibroblast of lung
16
kidney
16
layer of hippocampus
16
macrophage
16
ovary
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
ascending aorta
15
cerebellum
15
frontal cortex
15
neutrophil
15
retinal pigment epithelial cell
15
small intestine
14
endocrine pancreas
14
mammary gland epithelial cell
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
bronchial epithelial cell
13
heart right ventricle
13
temporal lobe
12
Ammon's horn
12
aorta
12
endothelial cell
12
fibroblast of dermis
12
lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
brain
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
testis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lymphocyte
10
mesenchymal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
progenitor cell of endocrine pancreas
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
cardiac muscle cell
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
fibroblast
9
fibroblast of cardiac tissue
9
hepatic stellate cell
9
induced pluripotent stem cell
9
liposarcoma
9
parathyroid adenoma
9
thymus
9
vagina
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HT-29
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic delta cell
8
pituitary stalk
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
KARPAS-422 cell
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
neuronal stem cell
7
pancreatic stellate cell
7
renal cortical epithelial cell
7
right lobe of liver
7
skeletal muscle satellite cell
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H9
6
HAP-1
6
HCT116
6
HUES8
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
AG09309 cell
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP