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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
83
heart
82
stomach
68
lung
67
brain
66
muscle of arm
64
HeLa-S3
62
small intestine
61
adrenal gland
60
kidney
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
51
H1-hESC
45
thymus
44
right lung
42
liver
42
right kidney
40
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
K562
38
islet of Langerhans
38
renal pelvis
36
B cell
36
left kidney
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
30
heart left ventricle
30
spleen
29
adipose tissue
25
monocyte
24
body of pancreas
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
regulatory T cell
22
sigmoid colon
22
tibial nerve
21
MCF-7
21
epithelial cell of proximal tubule
21
neural progenitor cell
21
trophoblast cell
20
T-helper 17 cell
19
HFFc6
19
caudate nucleus
19
foreskin keratinocyte
19
mononuclear cell
19
ovary
19
psoas muscle
18
adipocyte
18
coronary artery
18
endothelial cell of umbilical vein
18
glomerular endothelial cell
18
heart right ventricle
subcutaneous adipose tissue
17
T-helper 2 cell
17
hepatocyte
17
muscle of trunk
17
substantia nigra
17
thyroid gland
17
transverse colon
16
H9
16
T cell
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
omental fat pad
16
right atrium auricular region
15
CD8-positive, alpha-beta T cell
15
ascending aorta
15
endocrine pancreas
15
natural killer cell
15
retina
15
skeletal muscle tissue
15
tibial artery
14
cerebellum
14
foreskin fibroblast
14
frontal cortex
14
pancreas
14
testis
13
CD4-positive, alpha-beta T cell
13
GM12878
13
Peyer's patch
13
aorta
13
layer of hippocampus
13
neurosphere
13
neutrophil
12
cardiac muscle cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
macrophage
12
skeletal muscle myoblast
12
temporal lobe
12
upper lobe of left lung
11
EndoC_BH1
11
cardiomyocytes
11
mesenchymal stem cell
11
putamen
10
Ammon's horn
10
SK-N-SH
10
angular gyrus
10
breast epithelium
10
dermis blood vessel endothelial cell
10
esophagus
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
left cardiac atrium
10
mammary gland epithelial cell
10
pancreatic ductal cell
10
right renal cortex interstitium
9
HepG2
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
endometrium adenocarcinoma
9
endothelial cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
induced pluripotent stem cell
9
left renal pelvis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
vagina
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
cardiomyocytes (cardiac muscle cell)
8
endodermal cell
8
extended pluripotent stem (EPS) cells
8
eye
8
fibroblast
8
fibroblast of breast
8
immortal human breast epithelial cell line cell
8
keratinocyte
8
lower leg skin
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
prostate gland
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
embryonic stem cell
7
kidney tubule cell
7
limb
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
amygdala
6
anterior cingulate cortex
6
astrocyte
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
choroid plexus epithelial cell
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
gamma-delta T cell
6
gastroesophageal sphincter
6
hypothalamus
6
kidney glomerular epithelial cell
6
lymphoblastoid cell line
6
mucosa of rectum
6
osteoblast
6
pancreatic acinar cell
6
pancreatic beta cell
6
uterus
5
A673
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
GM19238
5
GM19239
5
GM19240
5
HAP-1
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
subcutaneous adipose tissue
software_used.software.name!
macs
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP