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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
gene expression
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
snATAC-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
28
endothelial cell
23
fibroblast
20
pericyte cell
19
smooth muscle cell
16
endothelial cell of hepatic sinusoid
15
kidney
15
macrophage
13
hepatocyte
12
excitatory neuron
9
astrocyte
7
skeletal muscle fiber
6
B cell
6
colon epithelial cell
6
endothelial cell of lymphatic vessel
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
T cell
5
adipocyte
5
cortical cell of adrenal gland
5
endocardial cell
5
erythroblast
5
inhibitory neuron
5
mast cell
5
type II pneumocyte
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
mesenchymal stem cell
4
natural killer cell
4
pancreatic acinar cell
4
smooth muscle cell of the esophagus
3
CD8-positive, alpha-beta T cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
glial cell
3
mesothelial cell
3
oligodendrocyte precursor cell
3
pancreatic ductal cell
3
schwann cell
3
type I pneumocyte
2
CD4-positive, alpha-beta T cell
2
Muller cell
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
cardiac endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
colon goblet cell
2
dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
hepatic stellate cell
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mammary gland epithelial cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive t cell
2
neural cell
2
neuronal stem cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
B-1 B cell
1
B-2 B cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
alternatively activated macrophage
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
hepatoblast
1
inflammatory macrophage
1
islet of Langerhans
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
metanephros
1
myofibroblast cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
sympathetic neuron
1
trophoblast giant cell
1
undifferentiated ESC (H9 cell line)
1
ureteric bud
Disease term
2
heart failure
Organ
5
connective tissue
Life stage
2
adult
Date released
2
February, 2024
2
May, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Kyle Gaulton, UCSD
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
24
AMP
4
AMP2
1
ENCODE3
biosample_term_name!
Daoy
Showing 5 of 5 results
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Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP