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Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
tsv
1
txt
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
10
endothelial cell of hepatic sinusoid
8
kidney
6
endothelial cell
5
hepatocyte
5
smooth muscle cell
4
mesenchymal stem cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
2
adipocyte
2
fibroblast
2
glial cell
2
leukocyte
2
neural cell
2
skeletal muscle satellite cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
embryonic stem cell
1
glomerular visceral epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
neuron cell of Hypothalamus (neuron)
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
undifferentiated ESC (H9 cell line)
Life stage
1
adult
Date released
1
May, 2022
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
AMP
RFA
65
AMP
10
ENCODE3
2
T1D
1
AMP2
1
LungMap2
files.file_type!
tsv
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FileSet
DSR974HML
released
Annotation file set
: Accessible chromatin annotation of Macrophages from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP