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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
3
accessible chromatin
1
eQTL
Annotation Category
4
Gene expression levels
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
scRNA-seq
2
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
3
tsv
3
txt
1
bigWig
File set status
8
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
15
kidney
14
endothelial cell of hepatic sinusoid
10
hepatocyte
8
endothelial cell
4
skeletal muscle fiber
4
smooth muscle cell
3
mesenchymal stem cell
3
type I muscle cell
3
type II muscle cell
2
adipocyte
2
fibroblast
2
glial cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
macrophage
2
neural cell
2
renal principal cell
2
skeletal muscle satellite cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
natural killer cell
1
neuron cell of Hypothalamus (neuron)
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
undifferentiated ESC (H9 cell line)
Organ
8
epithelium
Life stage
5
adult
Date released
4
August, 2021
3
February, 2024
1
May, 2022
October, 2022
Software used
4
r
3
macs
3
seurat
1
deeptools
1
qTLtools
1
samtools
1
umitools
Lab
4
Katalin Susztak, Upenn
3
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
8
AMP
RFA
16
ENCODE3
14
AMP
8
AMP2
2
T1D
biosample_term_name!
CD4-positive, alpha-beta T cell
macrophage
month_released!
October, 2022
Showing 8 of 8 results
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Download
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP