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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
3
gene expression
2
accessible chromatin
Annotation Category
5
cis-regulatory elements
3
Gene expression levels
Annotation type Category
4
snATAC-seq
3
scRNA-seq
1
ATAC-seq
Available data
5
bed bed3+
3
tsv
3
txt
1
bigWig
File set status
8
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
14
endothelial cell of hepatic sinusoid
11
hepatocyte
8
endothelial cell
5
fibroblast
5
macrophage
4
natural killer cell
3
B cell
3
endothelial cell of lymphatic vessel
3
mast cell
3
smooth muscle cell
2
adipocyte
2
dendritic cell
2
endocardial cell
2
kidney distal convoluted tubule epithelial cell
2
neuronal stem cell
2
pericyte cell
2
regular ventricular cardiac myocyte
2
renal principal cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
cholangiocyte
1
effector CD8-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
myofibroblast cell
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
Disease term
2
heart failure
1
liver disease
Organ
8
epithelium
Life stage
8
adult
Date released
4
August, 2021
3
May, 2024
1
May, 2022
Software used
3
r
3
seurat
2
macs
Lab
4
Katalin Susztak, Upenn
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
8
AMP
RFA
8
AMP2
4
AMP
biosample_term_name!
H9
kidney interstitial fibroblast
month_released!
February, 2023
Showing 8 of 8 results
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Download
FileSet
DSR525HAC
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR500MUW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR323SPU
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP