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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
6
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
14
endothelial cell of hepatic sinusoid
11
hepatocyte
8
endothelial cell
7
kidney
7
smooth muscle cell
5
fibroblast
4
adipocyte
4
macrophage
4
mesenchymal stem cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
B cell
3
endothelial cell of lymphatic vessel
3
mast cell
3
natural killer cell
2
endocardial cell
2
glial cell
2
leukocyte
2
neural cell
2
neuronal stem cell
2
pericyte cell
2
regular ventricular cardiac myocyte
2
skeletal muscle satellite cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
cholangiocyte
1
dendritic cell
1
embryonic stem cell
1
erythrocyte
1
hepatic stellate cell
1
myofibroblast cell
1
neuron cell of Hypothalamus (neuron)
1
undifferentiated ESC (H9 cell line)
Disease term
2
heart failure
1
liver disease
Organ
8
epithelium
Life stage
4
adult
Date released
August, 2021
3
February, 2024
3
May, 2024
1
May, 2022
1
October, 2022
Software used
2
macs
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
8
AMP
RFA
29
AMP
16
ENCODE3
8
AMP2
2
T1D
month_released!
August, 2021
Showing 8 of 8 results
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Download
FileSet
DSR525HAC
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR500MUW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR323SPU
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP