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Getting started
Schema
Clear Filters
Annotation type
3018
target gene predictions
2638
pQTL
1709
candidate regulatory elements
944
chromatin state
685
gene expression
484
differential activity
397
accessible chromatin
180
eQTL
141
variant allelic effects
93
binding sites
74
Fine-mapped variants
25
caQTL
7
sQTL
4
variant to gene
3
meQTL
2
other
1
representative DNase hypersensitivity sites
Annotation Category
3144
cis-regulatory elements
3072
Genetic variant effects
3018
Target gene links
1169
Gene expression levels
2
Others
Annotation type Category
4172
DNase-seq
3541
ChIP-seq
2638
quantitative proteomics
546
RNA-seq
319
ATAC-seq
305
single cell RNA-seq
189
HiC
167
snATAC-seq
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
5535
bed bed3+
3551
tsv
869
bed bed9
112
txt
90
bigWig
40
bigBed bed9
34
bed bed9+
26
csv
7
bigBed narrowPeak
1
bam
File set status
10403
released
1
archived
1
revoked
Genome assembly (visualization)
4465
hg19
3399
GRCh38
4
hg18
Organism
10357
Homo sapiens
Biosample type
5637
tissue
3211
primary cell
1238
cell line
313
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
103
heart
103
stomach
86
head of caudate nucleus
83
brain
83
muscle of arm
82
kidney
82
lung
78
placenta
76
adrenal gland
75
small intestine
74
fibroblast
73
A549
71
endothelial cell
69
muscle of back
69
muscle of leg
68
HeLa-S3
68
T-cell
68
large intestine
67
left lung
66
common myeloid progenitor, CD34-positive
63
CD4-positive, alpha-beta T cell
60
smooth muscle cell
59
B cell
59
dorsolateral prefrontal cortex
59
macrophage
55
right lung
55
stimulated activated CD4-positive, alpha-beta T cell
54
thymus
52
hematopoietic multipotent progenitor cell
52
right kidney
51
H1-hESC
50
renal cortex interstitium
48
posterior cingulate gyrus
48
renal pelvis
47
natural killer cell
45
K562
45
left kidney
43
liver
40
CD8-positive, alpha-beta T cell
40
heart left ventricle
39
CD14-positive monocyte
39
hepatocyte
38
islet of Langerhans
37
CD4-positive, alpha-beta memory T cell
37
T cell
37
adipocyte
37
spinal cord
36
spleen
34
pericyte
32
activated CD4-positive, alpha-beta T cell
32
cardiac muscle cell
31
T-helper 1 cell
30
monocyte
28
MCF-7
28
T-helper 17 cell
28
adipose tissue
28
body of pancreas
28
heart right ventricle
28
ovary
27
stimulated activated CD8-positive, alpha-beta memory T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
glutamatergic neuron
26
trophoblast cell
25
epithelial cell of proximal tubule
25
naive thymus-derived CD4-positive, alpha-beta T cell
25
sigmoid colon
25
tibial nerve
24
dendritic cell
24
neuron
24
psoas muscle
23
H9
23
gastrocnemius medialis
23
keratinocyte
23
pancreas
23
regulatory T cell
22
GABAergic neuron
22
HCT116
22
astrocyte
22
endothelial cell of lymphatic vessel
22
neural progenitor cell
21
foreskin keratinocyte
21
naive thymus-derived CD8-positive, alpha-beta T cell
21
thyroid gland
21
transverse colon
20
caudate nucleus
20
endothelial cell of umbilical vein
20
glomerular endothelial cell
20
muscle of trunk
20
upper lobe of left lung
19
HFFc6
19
mononuclear cell
19
pancreatic ductal cell
18
coronary artery
18
omental fat pad
18
retina
18
right atrium auricular region
18
testis
18
tibial artery
17
ascending aorta
17
endocardial cell
17
fibroblast of lung
17
foreskin fibroblast
17
subcutaneous adipose tissue
17
substantia nigra
16
Peyer's patch
16
chorionic villus
16
induced pluripotent stem cell
16
left renal cortex interstitium
15
activated T-cell
15
cerebellum
15
frontal cortex
15
mast cell
15
mesenchymal stem cell
15
right renal pelvis
15
skeletal muscle tissue
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
left renal pelvis
14
right lobe of liver
14
right renal cortex interstitium
13
GM12878
13
dermis blood vessel endothelial cell
13
fibroblast of dermis
13
layer of hippocampus
13
naive B cell
13
neurosphere
13
neutrophil
13
pericyte cell
13
skeletal muscle myoblast
13
thyroid follicular cell
12
EndoC_BH1
12
breast epithelium
12
hepatic stellate cell
12
left cardiac atrium
12
putamen
12
temporal lobe
11
Ammon's horn
11
HepG2
11
SK-N-SH
11
erythroblast
11
mammary gland epithelial cell
11
progenitor cell
11
vagina
10
colonic mucosa
10
fibroblast of cardiac tissue
10
inflammatory macrophage
10
prostate gland
10
thoracic aorta
10
tongue
9
B Cell
9
SK-N-DZ
9
WI38
9
bronchial epithelial cell
9
cardiomyocytes
9
epithelial cell of prostate
9
esophagus
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
9
eye
9
glomerular visceral epithelial cell
9
kidney tubule cell
9
limb
9
lower leg skin
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
right cardiac atrium
9
skeletal muscle satellite cell
9
type B pancreatic cell
9
uterus
8
22Rv1
8
LNCaP clone FGC
8
T47D
8
cingulate gyrus
8
duodenal mucosa
8
epithelial cell of esophagus
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic acinar cell
8
pituitary stalk
8
retinal pigment epithelial cell
7
A673
7
CD4-positive, CD25-positive, alpha-beta regulatory T cell
7
HAP-1
7
IMR-90
7
angular gyrus
7
cardiac fibroblast
7
cardiomyocytes (cardiac muscle cell)
7
cell of skeletal muscle
7
effector memory CD8-positive, alpha-beta T cell
7
embryonic stem cell
7
endodermal cell
7
endometrium adenocarcinoma
Organ
3303
blood
2845
vasculature
2818
blood vessel
2789
bodily fluid
2655
vein
805
brain
698
kidney
681
epithelium
451
heart
419
lung
387
connective tissue
342
musculature of body
324
intestine
256
skin of body
246
pancreas
220
limb
206
large intestine
191
liver
180
embryo
158
extraembryonic component
132
adipose tissue
131
stomach
111
muscle organ
95
adrenal gland
94
eye
94
small intestine
89
thymus
88
placenta
85
uterus
83
mammary gland
78
bone element
69
ureter
67
artery
67
prostate gland
60
__MARKER__
60
spleen
56
gonad
51
penis
46
spinal cord
45
thyroid gland
44
esophagus
40
lymph node
30
ovary
26
testis
22
nerve
21
lymphoid tissue
20
mouth
16
skeleton
15
lymphatic vessel
14
breast
12
pituitary gland
12
urinary bladder
12
vagina
11
bronchus
11
tongue
7
bone marrow
3
nose
1
embryonic structure
1
gallbladder
1
pericardium
Life stage
4825
adult
1375
embryonic
448
unknown
437
fetal
112
child
56
newborn
32
young adult
30
postnatal
Date released
2636
February, 2025
2499
September, 2022
1984
July, 2026
1021
February, 2021
320
May, 2026
319
February, 2024
286
September, 2023
243
May, 2021
155
May, 2020
128
March, 2020
111
November, 2021
102
January, 2022
101
October, 2022
81
August, 2021
70
March, 2023
64
February, 2020
40
May, 2024
35
August, 2017
35
May, 2022
30
March, 2024
28
January, 2021
24
January, 2020
21
July, 2025
19
April, 2020
9
August, 2018
9
May, 2019
8
April, 2019
7
February, 2023
5
October, 2019
4
March, 2026
2
January, 2018
2
January, 2025
2
November, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2020
Software used
macs
2386
r
1035
chromhmm
838
encode-ccres
250
abc
139
qTLtools
136
deltasvm
117
deseq2
36
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
9194
AMP-T2D consortium
453
Kyle Gaulton, UCSD
281
KPMP
165
Bing Ren, UCSD
139
Jesse Engreitz, Stanford University
74
Stephen Parker, UMich
33
Katalin Susztak, Upenn
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
9
Ines Cebola, Imperial College London
5
ITG
5
Patrick T. Ellinor, Broad
5
Struan F.A. Grant, CHOP
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
3
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
9940
AMP
281
KPMP
111
ENCODE
32
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1458
ENCODE-rE2G
960
ENCODE
573
DGA
393
HDMA
320
pyxis
281
KPMP
262
AMP
252
T1D
174
4DN
151
GTEx
148
T2DKP
141
T2DKP
133
CATlas
101
T2D
101
eQTLCatalogue
98
BLUEPRINT
55
HPAP
26
FNIH_projects-heart
24
CMDGA
12
FNIH_projects-liver
RFA
9812
AMP
281
KPMP
128
AMP2
111
ENCODE3
32
T1D