Clear Filters

Annotation type

3018target gene predictions
1709candidate regulatory elements
1248accessible chromatin
977histone modifications
944chromatin state
817binding sites
331differential activity
144eQTL
141variant allelic effects
45gene expression
13caQTL
7sQTL
5hQTL
3meQTL
3other
3pQTL
2Fine-mapped variants
2variant to gene

Annotation Category

5695cis-regulatory elements
3018Target gene links
376Gene expression levels
321Genetic variant effects
2Others

Annotation type Category

5248ChIP-seq
4521DNase-seq
515ATAC-seq
448snATAC-seq
189HiC
180RNA-seq
139H3K27ac ChIP-Seq
47pCHi-C
17Expression arrays
16snRNA-seq
8scRNA-seq
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
3quantitative proteomics
1SNP-SELEX

Available data

8068bed bed3+
tsv
869bed bed9
546bigWig
112txt
40bigBed bed9
34bed bed9+
26csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

9410released
1archived
1revoked

Genome assembly (visualization)

6906hg19
3799GRCh38
4hg18

Organism

9365Homo sapiens

Biosample type

3321primary cell
3109tissue
2537cell line
439in vitro differentiated cells
4stem cell

Biosample term

120monocyte
107heart
106stomach
93fibroblast
88brain
88kidney
86head of caudate nucleus
84muscle of arm
82placenta
81lung
80endothelial cell
76A549
76adrenal gland
76small intestine
71muscle of leg
70CD8-positive, alpha-beta T cell
70large intestine
70macrophage
69muscle of back
68HeLa-S3
68T-cell
67left lung
67smooth muscle cell
66common myeloid progenitor, CD34-positive
64B cell
64CD4-positive, alpha-beta T cell
58dorsolateral prefrontal cortex
57thymus
56right lung
55stimulated activated CD4-positive, alpha-beta T cell
54hematopoietic multipotent progenitor cell
52right kidney
51renal cortex interstitium
50renal pelvis
49liver
49natural killer cell
48K562
48posterior cingulate gyrus
46H1-hESC
45left kidney
45neural progenitor cell
44T cell
44adipocyte
43heart left ventricle
43hepatocyte
41retina
41spinal cord
39CD14-positive monocyte
38cardiac muscle cell
38spleen
37CD4-positive, alpha-beta memory T cell
34islet of Langerhans
34pericyte
33MCF-7
33activated CD4-positive, alpha-beta T cell
33keratinocyte
32glutamatergic neuron
30astrocyte
30pancreas
29adipose tissue
28heart right ventricle
28naive thymus-derived CD4-positive, alpha-beta T cell
28ovary
28trophoblast cell
26CD8-positive, alpha-beta memory T cell
26neuron
26sigmoid colon
25T-helper 1 cell
25psoas muscle
25stimulated activated CD8-positive, alpha-beta memory T cell
24endothelial cell of lymphatic vessel
24foreskin keratinocyte
24gastrocnemius medialis
24pericyte cell
23H9
23T-helper 2 cell
23dendritic cell
23foreskin fibroblast
23upper lobe of left lung
22GABAergic neuron
22HCT116
22body of pancreas
22endothelial cell of umbilical vein
22pancreatic ductal cell
22thyroid gland
22tibial nerve
21T-helper 17 cell
21regulatory T cell
20breast cancer cell
20mesenchymal stem cell
20mononuclear cell
20muscle of trunk
20pigmented layer of retina
20testis
20transverse colon
19HFFc6
19HepG2
19endocardial cell
19naive thymus-derived CD8-positive, alpha-beta T cell
18hepatic stellate cell
17Peyer's patch
17caudate nucleus
17embryonic stem cell
17erythroblast
17fibroblast of lung
17mast cell
16GM12878
16chorionic villus
16coronary artery
16fibroblast of cardiac tissue
16layer of hippocampus
16left renal cortex interstitium
16left renal pelvis
16tibial artery
15activated T-cell
15bronchial epithelial cell
15mammary epithelial cell
15mammary gland epithelial cell
15neutrophil
15osteoblast
15prostate gland
15retinal pigment epithelial cell
15skeletal muscle myoblast
14EndoC_BH1
14activated CD8-positive, alpha-beta memory T cell
14endocrine pancreas
14right renal pelvis
14skeletal muscle satellite cell
13aorta
13breast epithelium
13dermis blood vessel endothelial cell
13fibroblast of dermis
13neuronal stem cell
13neurosphere
13pancreatic beta cell
13skeletal muscle tissue
12SK-N-DZ
12colonic mucosa
12epithelial cell of prostate
12excitatory neuron
12left cardiac atrium
12lymphoblastoid cell line
12neuroblastoma cell
12omental fat pad
12pancreatic acinar cell
11IMR-90
11SK-N-SH
11ascending aorta
11choroid plexus epithelial cell
11endothelial cell of hepatic sinusoid
11esophagus muscularis mucosa
11frontal cortex
11kidney tubule cell
11naive B cell
11pancreatic alpha cell
11progenitor cell
11right atrium auricular region
11thoracic aorta
10Rhabdomyosarcoma
10endodermal cell
10epithelial cell of proximal tubule
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10limb
10lymphocyte
10mesothelial cell
10putamen
10right renal cortex interstitium
10thyroid follicular cell
922Rv1
9GM06990
9HAP-1
9HT-29
9PC-9
9SK-N-MC
9WERI-Rb-1
9WI38
9cerebellum
9diffuse intrinsic pontine glioma
9esophagus
9eye
9globus pallidus
9glomerular endothelial cell
9liposarcoma
9lower leg skin
9megakaryocyte
9oligodendrocyte
9pancreatic A cell
9pancreatic delta cell
9substantia nigra
9temporal lobe
9tongue
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8MM.1S
8NAMALWA cell
8OCI-LY7

Organ

836brain
729blood
626epithelium
505kidney
459heart
454connective tissue
439lung
365musculature of body
355intestine
294skin of body
243pancreas
227limb
224large intestine
217bodily fluid
213liver
205embryo
204vasculature
180blood vessel
174extraembryonic component
159eye
138stomach
122adipose tissue
111muscle organ
104mammary gland
102bone element
101adrenal gland
97placenta
97small intestine
93thymus
91uterus
86prostate gland
73ureter
72artery
64penis
62gonad
62lymph node
62spleen
60__MARKER__
46esophagus
46thyroid gland
44spinal cord
31ovary
30testis
24skeleton
23lymphoid tissue
23vein
20mouth
19nerve
16bronchus
16lymphatic vessel
14breast
13bone marrow
12pituitary gland
12urinary bladder
11tongue
11vagina
5trachea
4nose
1embryonic structure
1gallbladder
1pericardium

Life stage

1780adult
1374embryonic
430unknown
426fetal
115child
75newborn
32young adult
30postnatal

Date released

2511September, 2022
2412February, 2021
1984July, 2026
333November, 2021
320May, 2026
311February, 2024
301May, 2021
289June, 2020
155May, 2020
106January, 2022
101October, 2022
79August, 2021
72January, 2020
56January, 2021
49March, 2020
49May, 2022
44November, 2022
38May, 2024
35August, 2017
31February, 2023
19April, 2020
17February, 2020
14November, 2019
14October, 2019
13March, 2023
12July, 2025
9August, 2018
9May, 2019
8April, 2019
5September, 2023
4March, 2026
3September, 2018
2January, 2025
2November, 2020
1August, 2020
1August, 2022
1February, 2025
1June, 2021

Software used

2558macs
1713r
1035chromhmm
838encode-ccres
250abc
136deltasvm
113qTLtools
36cicero
27chicago
27nospecificsoft_customcode
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
8fastqtl
7deseq2
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

8262AMP-T2D consortium
447Kyle Gaulton, UCSD
393Bing Ren, UCSD
139Jesse Engreitz, Stanford University
77Stephen Parker, UMich
21Katalin Susztak, Upenn
19Xin Sun, UCSD
15Ines Cebola, Imperial College London
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Joseph Wu, Stanford
3Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA
2Doug Phanstiel, UNC

Project

8980AMP
333ENCODE
60T1D
19LungMap
15community
5ITG

Collection Tags

2499EpiMap
1848ChIP-Atlas
1458ENCODE-rE2G
948ENCODE
459DGA
424AMP
406T2DKP
393HDMA
329T1D
320pyxis
181BLUEPRINT
1744DN
133CATlas
122 T2DKP
111T2D
101eQTLCatalogue
97