Clear Filters

Annotation type

2906target gene predictions
2638pQTL
1709candidate regulatory elements
1020accessible chromatin
977histone modifications
944chromatin state
817binding sites
685gene expression
484differential activity
180eQTL
88variant allelic effects
74Fine-mapped variants
25caQTL
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

5468cis-regulatory elements
3025Genetic variant effects
2906Target gene links
1169Gene expression levels
2Others

Annotation type Category

5248ChIP-seq
4522DNase-seq
2638quantitative proteomics
546RNA-seq
404ATAC-seq
305single cell RNA-seq
189HiC
178snATAC-seq
147scRNA-seq
139H3K27ac ChIP-Seq
84snDropSeq
47pCHi-C
25snRNA-seq
17Expression arrays
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
1SNP-SELEX

Available data

7675bed bed3+
3551tsv
869bed bed9
324bigWig
112txt
40bigBed bed9
34bed bed9+
26csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

12568released
1archived
1revoked

Genome assembly (visualization)

6609hg19
3566GRCh38
4hg18

Organism

12522Homo sapiens

Biosample type

5951tissue
3540primary cell
2559cell line
514in vitro differentiated cells
4stem cell

Biosample term

2636whole blood
135monocyte
110heart
107stomach
95kidney
89brain
86head of caudate nucleus
84muscle of arm
82lung
82placenta
77adrenal gland
76A549
76small intestine
72endothelial cell
71CD8-positive, alpha-beta T cell
71muscle of leg
70large intestine
69muscle of back
68HeLa-S3
68T-cell
67fibroblast
67left lung
66common myeloid progenitor, CD34-positive
63B cell
62CD4-positive, alpha-beta T cell
60macrophage
59dorsolateral prefrontal cortex
57thymus
56right lung
55hematopoietic multipotent progenitor cell
55smooth muscle cell
55stimulated activated CD4-positive, alpha-beta T cell
54H1-hESC
52neural progenitor cell
52right kidney
51natural killer cell
51renal cortex interstitium
50liver
50renal pelvis
49hepatocyte
48K562
48posterior cingulate gyrus
45left kidney
44adipocyte
44heart left ventricle
44islet of Langerhans
43retina
41spinal cord
39CD14-positive monocyte
39spleen
38T cell
37CD4-positive, alpha-beta memory T cell
37cardiac muscle cell
34pericyte
33MCF-7
33activated CD4-positive, alpha-beta T cell
32T-helper 1 cell
31adipose tissue
29heart right ventricle
29ovary
28T-helper 17 cell
28body of pancreas
28glutamatergic neuron
28keratinocyte
28pancreas
28regulatory T cell
28tibial nerve
28trophoblast cell
27naive thymus-derived CD4-positive, alpha-beta T cell
27pancreatic ductal cell
26CD8-positive, alpha-beta memory T cell
26T-helper 2 cell
26epithelial cell of proximal tubule
25psoas muscle
25stimulated activated CD8-positive, alpha-beta memory T cell
24dendritic cell
24foreskin keratinocyte
24gastrocnemius medialis
24sigmoid colon
23EndoC_BH1
23H9
23caudate nucleus
23foreskin fibroblast
23neuron
23upper lobe of left lung
22GABAergic neuron
22HCT116
22astrocyte
22endothelial cell of umbilical vein
22glomerular endothelial cell
22thyroid gland
21coronary artery
21endothelial cell of lymphatic vessel
21right atrium auricular region
21testis
21tibial artery
20breast cancer cell
20mesenchymal stem cell
20mononuclear cell
20naive thymus-derived CD8-positive, alpha-beta T cell
20subcutaneous adipose tissue
20transverse colon
19HFFc6
19HepG2
19omental fat pad
18ascending aorta
18embryonic stem cell
18hepatic stellate cell
18muscle of trunk
18pigmented layer of retina
17Peyer's patch
17fibroblast of lung
17frontal cortex
16GM12878
16cerebellum
16chorionic villus
16endocardial cell
16induced pluripotent stem cell
16layer of hippocampus
16substantia nigra
15activated T-cell
15bronchial epithelial cell
15mammary epithelial cell
15skeletal muscle myoblast
14activated CD8-positive, alpha-beta memory T cell
14aorta
14endocrine pancreas
14endothelial cell of hepatic sinusoid
14left renal cortex interstitium
14mast cell
14osteoblast
14pancreatic beta cell
14retinal pigment epithelial cell
14right renal pelvis
14skeletal muscle tissue
13breast epithelium
13dermis blood vessel endothelial cell
13fibroblast of cardiac tissue
13fibroblast of dermis
13glomerular visceral epithelial cell
13left cardiac atrium
13mammary gland epithelial cell
13naive B cell
13pancreatic alpha cell
13prostate gland
13putamen
12Ammon's horn
12SK-N-DZ
12colonic mucosa
12epithelial cell of prostate
12left renal pelvis
12lymphoblastoid cell line
11IMR-90
11SK-N-SH
11choroid plexus epithelial cell
11erythroblast
11esophagus muscularis mucosa
11kidney tubule cell
11neuronal stem cell
11neurosphere
11neutrophil
11pancreatic delta cell
11progenitor cell of endocrine pancreas
11thoracic aorta
10Rhabdomyosarcoma
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10inflammatory macrophage
10limb
10neuroblastoma cell
10pancreatic acinar cell
10skeletal muscle satellite cell
922Rv1
9GM06990
9HAP-1
9HT-29
9PC-9
9SK-N-MC
9WERI-Rb-1
9WI38
9cardiomyocytes
9diffuse intrinsic pontine glioma
9esophagus
9eye
9globus pallidus
9lower leg skin
9progenitor cell
9temporal lobe
9tongue
8B Cell
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8MM.1S
8NAMALWA cell
8OCI-LY7
8T47D

Organ

3365blood
2894vasculature
2858blood vessel
2853bodily fluid
2659vein
903brain
801epithelium
753kidney
478heart
459connective tissue
430lung
373musculature of body
336intestine
298pancreas
285skin of body
244limb
234liver
220large intestine
213embryo
171extraembryonic component
157eye
142adipose tissue
129stomach
111muscle organ
105bone element
97mammary gland
95placenta
93small intestine
92thymus
91adrenal gland
91uterus
88artery
86prostate gland
73ureter
64penis
63spleen
62gonad
62lymph node
60__MARKER__
49spinal cord
44thyroid gland
42esophagus
31testis
30ovary
25nerve
24lymphoid tissue
24skeleton
21mouth
18lymphatic vessel
15breast
13bronchus
13pituitary gland
13urinary bladder
12bone marrow
12tongue
12vagina
5trachea
4nose
1embryonic structure
1gallbladder
1pericardium

Life stage

5063adult
1386embryonic
468unknown
455fetal
115child
75newborn
32young adult
30postnatal

Date released

2636February, 2025
2590February, 2021
2511September, 2022
1984July, 2026
389May, 2021
320February, 2024
320May, 2026
289June, 2020
286September, 2023
155May, 2020
128August, 2021
128March, 2020
105January, 2022
101October, 2022
89January, 2020
70March, 2023
64February, 2020
56January, 2021
44November, 2022
43May, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
30March, 2024
19April, 2020
14November, 2019
14October, 2019
9August, 2018
9May, 2019
8April, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
2January, 2025
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2386r
2330macs
1035chromhmm
838encode-ccres
139abc
139qTLtools
117deseq2
83deltasvm
35cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

11412AMP-T2D consortium
502Kyle Gaulton, UCSD
Bing Ren, UCSD
281KPMP
139Jesse Engreitz, Stanford University
98Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

12188AMP
281KPMP
60T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank