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Annotation type
8
caQTL
Annotation Category
8
Genetic variant effects
Annotation type Category
7
snATAC-seq
1
ATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
tissue
Biosample term
2
endothelial cell
1
liver
1
macrophage
1
mesenchymal stem cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
3
blood vessel
vasculature
2
artery
2
connective tissue
2
epithelium
2
heart
2
musculature of body
1
liver
Date released
5
October, 2022
2
February, 2023
1
May, 2022
Software used
2477
macs
2301
r
995
chromhmm
812
encode-ccres
246
abc
121
deltasvm
113
qTLtools
107
deseq2
32
cicero
27
chicago
26
nospecificsoft_customcode
25
seurat
21
gtex_eqtl:V8
21
gtex_finemapping_eQTL:caveman
21
gtex_finemapping_eQTL:caviar
21
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
matrix-eQTL
12
deeptools
12
hiccups
12
umitools
8
fastqtl
8
rasqual
6
eigenmt
5
peer
5
salmon
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
5
Stephen Parker, UMich
2
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
8
AMP
RFA
5
AMP2
3
AMP
biosample_term_name!
AG04449 cell
month_released!
November, 2019
organ_slims!
vasculature
Showing 8 of 8 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR868SOF
released
Annotation file set
: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP