Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
sQTL
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Life stage
3
adult
Date released
3
May, 2021
Software used
2490
macs
2339
r
1017
chromhmm
829
encode-ccres
246
abc
132
deltasvm
121
deseq2
qTLtools
32
cicero
26
chicago
25
nospecificsoft_customcode
25
seurat
23
gtex_eqtl:V8
23
gtex_finemapping_eQTL:caveman
23
gtex_finemapping_eQTL:caviar
23
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
matrix-eQTL
13
hiccups
12
deeptools
12
umitools
10
rasqual
8
fastqtl
5
eigenmt
5
peer
4
unknown
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
mach2qtl
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
emmax
1
epacts
1
fast-lmm
1
pepatac
1
probabel
1
spp
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
B-lymphoblastoid cell line
organ_slims!
liver
software_used.software.name!
qTLtools
Showing 3 of 3 results
table-tab-icon
matrix-icon
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP