Clear Filters

Annotation type

3017target gene predictions
2638pQTL
1709candidate regulatory elements
1243accessible chromatin
976histone modifications
944chromatin state
816binding sites
685gene expression
484differential activity
141variant allelic effects
79eQTL
74Fine-mapped variants
25caQTL
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

5689cis-regulatory elements
3017Target gene links
2977Genetic variant effects
1169Gene expression levels
2Others

Annotation type Category

5246ChIP-seq
4521DNase-seq
2638quantitative proteomics
511ATAC-seq
459snATAC-seq
445RNA-seq
305single cell RNA-seq
189HiC
147scRNA-seq
139H3K27ac ChIP-Seq
84snDropSeq
47pCHi-C
25snRNA-seq
17Expression arrays
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
1SNP-SELEX

Available data

7959bed bed3+
3551tsv
869bed bed9
542bigWig
112txt
40bigBed bed9
34bed bed9+
26csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

12852released
1archived
1revoked

Genome assembly (visualization)

6994hg19
3800GRCh38
4hg18

Organism

12806Homo sapiens

Biosample type

5895tissue
3896primary cell
2546cell line
511in vitro differentiated cells
4stem cell

Biosample term

2636whole blood
132monocyte
110heart
106stomach
95kidney
91endothelial cell
91fibroblast
87brain
86head of caudate nucleus
84muscle of arm
81lung
81placenta
76A549
76adrenal gland
75small intestine
73CD8-positive, alpha-beta T cell
71muscle of leg
70large intestine
70smooth muscle cell
69muscle of back
68HeLa-S3
68T-cell
67left lung
67macrophage
66B cell
66common myeloid progenitor, CD34-positive
64CD4-positive, alpha-beta T cell
58dorsolateral prefrontal cortex
57thymus
56right lung
55hematopoietic multipotent progenitor cell
55stimulated activated CD4-positive, alpha-beta T cell
54H1-hESC
52hepatocyte
52neural progenitor cell
52right kidney
51renal cortex interstitium
50natural killer cell
50renal pelvis
49liver
48K562
48posterior cingulate gyrus
46adipocyte
45left kidney
43heart left ventricle
43retina
42T cell
42islet of Langerhans
40spinal cord
39CD14-positive monocyte
38cardiac muscle cell
38spleen
37CD4-positive, alpha-beta memory T cell
33MCF-7
33keratinocyte
32activated CD4-positive, alpha-beta T cell
32glutamatergic neuron
32pericyte
31T-helper 1 cell
31pancreatic ductal cell
30adipose tissue
30astrocyte
29heart right ventricle
28body of pancreas
28ovary
28trophoblast cell
27T-helper 17 cell
27pancreas
27tibial nerve
26CD8-positive, alpha-beta memory T cell
26epithelial cell of proximal tubule
26naive thymus-derived CD4-positive, alpha-beta T cell
26regulatory T cell
25T-helper 2 cell
25psoas muscle
25stimulated activated CD8-positive, alpha-beta memory T cell
24dendritic cell
24endothelial cell of lymphatic vessel
24foreskin keratinocyte
24gastrocnemius medialis
24neuron
24pericyte cell
24sigmoid colon
23EndoC_BH1
23H9
23foreskin fibroblast
23upper lobe of left lung
22GABAergic neuron
22HCT116
22caudate nucleus
22endothelial cell of umbilical vein
22glomerular endothelial cell
21coronary artery
21thyroid gland
21tibial artery
20breast cancer cell
20mesenchymal stem cell
20mononuclear cell
20naive thymus-derived CD8-positive, alpha-beta T cell
20right atrium auricular region
20testis
19HFFc6
19HepG2
19endocardial cell
19hepatic stellate cell
19omental fat pad
19subcutaneous adipose tissue
19transverse colon
18ascending aorta
18embryonic stem cell
18muscle of trunk
18pancreatic beta cell
17Peyer's patch
17erythroblast
17fibroblast of lung
16GM12878
16chorionic villus
16endothelial cell of hepatic sinusoid
16fibroblast of cardiac tissue
16frontal cortex
16induced pluripotent stem cell
16mast cell
16pigmented layer of retina
16skeletal muscle satellite cell
15activated T-cell
15bronchial epithelial cell
15cerebellum
15mammary epithelial cell
15pancreatic acinar cell
15pancreatic alpha cell
15retinal pigment epithelial cell
15skeletal muscle myoblast
15substantia nigra
14activated CD8-positive, alpha-beta memory T cell
14aorta
14endocrine pancreas
14left renal cortex interstitium
14osteoblast
14right renal pelvis
14skeletal muscle tissue
13breast epithelium
13dermis blood vessel endothelial cell
13fibroblast of dermis
13glomerular visceral epithelial cell
13left cardiac atrium
13mammary gland epithelial cell
13naive B cell
13pancreatic delta cell
13prostate gland
12Ammon's horn
12SK-N-DZ
12colonic mucosa
12epithelial cell of prostate
12excitatory neuron
12left renal pelvis
11IMR-90
11SK-N-SH
11choroid plexus epithelial cell
11layer of hippocampus
11neuronal stem cell
11neurosphere
11progenitor cell of endocrine pancreas
11thoracic aorta
10Rhabdomyosarcoma
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10limb
10neuroblastoma cell
10neutrophil
10thyroid follicular cell
922Rv1
9GM06990
9HAP-1
9HT-29
9PC-9
9SK-N-MC
9WERI-Rb-1
9WI38
9cardiomyocytes
9diffuse intrinsic pontine glioma
9esophagus muscularis mucosa
9eye
9globus pallidus
9kidney tubule cell
9lower leg skin
9progenitor cell
9putamen
9temporal lobe
9tongue
8B Cell
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8MM.1S
8NAMALWA cell
8OCI-LY7
8T47D

Organ

3365blood
2899vasculature
2858blood vessel
2853bodily fluid
2659vein
952epithelium
885brain
755kidney
512connective tissue
485heart
439lung
385musculature of body
355intestine
315pancreas
293skin of body
242limb
239liver
224large intestine
215embryo
173extraembryonic component
161eye
139adipose tissue
139stomach
111muscle organ
106bone element
104mammary gland
101adrenal gland
96placenta
96small intestine
93thymus
92uterus
86prostate gland
85artery
73ureter
64penis
62lymph node
62spleen
61gonad
60__MARKER__
48spinal cord
46thyroid gland
45esophagus
31ovary
29testis
24lymphoid tissue
24nerve
24skeleton
21lymphatic vessel
20mouth
16bronchus
14breast
13bone marrow
13urinary bladder
12pituitary gland
12tongue
11vagina
5trachea
4nose
1embryonic structure
1gallbladder
1pericardium

Life stage

5069adult
1385embryonic
465unknown
458fetal
115child
75newborn
32young adult
30postnatal

Date released

2636February, 2025
2588February, 2021
2511September, 2022
1984July, 2026
389May, 2021
373February, 2024
333November, 2021
320May, 2026
288June, 2020
286September, 2023
155May, 2020
128August, 2021
128March, 2020
January, 2022
101October, 2022
89January, 2020
70March, 2023
64February, 2020
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
30March, 2024
19April, 2020
14November, 2019
14October, 2019
9August, 2018
9May, 2019
8April, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
2January, 2025
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2551macs
2386r
1035chromhmm
838encode-ccres
250abc
136deltasvm
117deseq2
38qTLtools
35cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

11304AMP-T2D consortium
502Kyle Gaulton, UCSD
392Bing Ren, UCSD
281KPMP
139Jesse Engreitz, Stanford University
98Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

12139AMP
333ENCODE
281KPMP
60T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank
2499EpiMap
1845ChIP-Atlas
1458ENCODE-rE2G
966ENCODE
645DGA
530AMP
406T2DKP
393HDMA
320T1D
320pyxis