Clear Filters

Annotation type

2766target gene predictions
2638pQTL
1708candidate regulatory elements
1248accessible chromatin
977histone modifications
944chromatin state
817binding sites
685gene expression
484differential activity
180eQTL
141variant allelic effects
74Fine-mapped variants
25caQTL
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

5695cis-regulatory elements
3078Genetic variant effects
2766Target gene links
1169Gene expression levels
2Others

Annotation type Category

5247ChIP-seq
4380DNase-seq
2638quantitative proteomics
546RNA-seq
460snATAC-seq
305single cell RNA-seq
265ATAC-seq
189HiC
147scRNA-seq
84snDropSeq
47pCHi-C
25snRNA-seq
17Expression arrays
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
1SNP-SELEX

Available data

7815bed bed3+
3551tsv
869bed bed9
546bigWig
112txt
40bigBed bed9
34bed bed9+
26csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

12708released
1archived
1revoked

Genome assembly (visualization)

6751hg19
3792GRCh38
4hg18

Organism

12662Homo sapiens

Biosample type

5923tissue
3776primary cell
2508cell line
497in vitro differentiated cells
4stem cell

Biosample term

2636whole blood
134monocyte
110heart
105stomach
95kidney
89brain
89fibroblast
86head of caudate nucleus
85endothelial cell
84muscle of arm
82lung
81placenta
75A549
75adrenal gland
75small intestine
72macrophage
70CD8-positive, alpha-beta T cell
70muscle of leg
69large intestine
69muscle of back
67HeLa-S3
67left lung
66T-cell
65B cell
65common myeloid progenitor, CD34-positive
64smooth muscle cell
63CD4-positive, alpha-beta T cell
59dorsolateral prefrontal cortex
56right lung
56thymus
55hematopoietic multipotent progenitor cell
55stimulated activated CD4-positive, alpha-beta T cell
53H1-hESC
52neural progenitor cell
52right kidney
51renal cortex interstitium
50hepatocyte
50natural killer cell
50renal pelvis
49liver
48posterior cingulate gyrus
47K562
45T cell
45islet of Langerhans
45left kidney
44heart left ventricle
43retina
42adipocyte
40spinal cord
38spleen
37CD4-positive, alpha-beta memory T cell
37cardiac muscle cell
34pericyte
33activated CD4-positive, alpha-beta T cell
32MCF-7
32T-helper 1 cell
30adipose tissue
30glutamatergic neuron
30keratinocyte
29heart right ventricle
29pancreatic ductal cell
28T-helper 17 cell
28astrocyte
28ovary
28regulatory T cell
28tibial nerve
27body of pancreas
27naive thymus-derived CD4-positive, alpha-beta T cell
27pancreas
26CD8-positive, alpha-beta memory T cell
26T-helper 2 cell
26epithelial cell of proximal tubule
26trophoblast cell
25stimulated activated CD8-positive, alpha-beta memory T cell
24CD14-positive monocyte
24foreskin keratinocyte
24neuron
24psoas muscle
23EndoC_BH1
23caudate nucleus
23endothelial cell of lymphatic vessel
23gastrocnemius medialis
23sigmoid colon
23upper lobe of left lung
22GABAergic neuron
22H9
22HCT116
22foreskin fibroblast
22glomerular endothelial cell
21endothelial cell of umbilical vein
21right atrium auricular region
21testis
21thyroid gland
21tibial artery
20breast cancer cell
20coronary artery
20mononuclear cell
20naive thymus-derived CD8-positive, alpha-beta T cell
20subcutaneous adipose tissue
19HFFc6
19hepatic stellate cell
19mesenchymal stem cell
19omental fat pad
19transverse colon
18HepG2
18ascending aorta
18dendritic cell
18embryonic stem cell
18endocardial cell
18pancreatic beta cell
18pigmented layer of retina
17Peyer's patch
17frontal cortex
17muscle of trunk
16cerebellum
16chorionic villus
16endothelial cell of hepatic sinusoid
16fibroblast of lung
16mast cell
16substantia nigra
15GM12878
15activated T-cell
15bronchial epithelial cell
15erythroblast
15fibroblast of cardiac tissue
15induced pluripotent stem cell
15pancreatic alpha cell
15retinal pigment epithelial cell
15skeletal muscle satellite cell
14activated CD8-positive, alpha-beta memory T cell
14aorta
14endocrine pancreas
14layer of hippocampus
14left renal cortex interstitium
14mammary epithelial cell
14right renal pelvis
14skeletal muscle myoblast
14skeletal muscle tissue
13dermis blood vessel endothelial cell
13excitatory neuron
13glomerular visceral epithelial cell
13left cardiac atrium
13naive B cell
13osteoblast
13pancreatic acinar cell
13prostate gland
12Ammon's horn
12SK-N-DZ
12breast epithelium
12colonic mucosa
12fibroblast of dermis
12left renal pelvis
12mammary gland epithelial cell
12pancreatic delta cell
11choroid plexus epithelial cell
11epithelial cell of prostate
11esophagus muscularis mucosa
11neurosphere
11neutrophil
11progenitor cell of endocrine pancreas
11putamen
11thoracic aorta
10IMR-90
10Rhabdomyosarcoma
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10limb
10lymphoblastoid cell line
10neuroblastoma cell
10neuronal stem cell
922Rv1
9GM06990
9SK-N-MC
9SK-N-SH
9WERI-Rb-1
9WI38
9cardiomyocytes
9diffuse intrinsic pontine glioma
9esophagus
9eye
9globus pallidus
9kidney tubule cell
9lower leg skin
9pericyte cell
9progenitor cell
9temporal lobe
9tongue
8B Cell
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8NAMALWA cell
8PC-9
8T47D
8cingulate gyrus
8duodenal mucosa
8epithelial cell of esophagus

Organ

3361blood
2898vasculature
2858blood vessel
2849bodily fluid
2658vein
893epithelium
892brain
756kidney
487connective tissue
481heart
431lung
377musculature of body
344intestine
305pancreas
286skin of body
241limb
236liver
218large intestine
209embryo
171extraembryonic component
161eye
139adipose tissue
134stomach
111muscle organ
106bone element
99mammary gland
96adrenal gland
96placenta
94small intestine
92thymus
90uterus
86artery
85prostate gland
73ureter
63penis
62gonad
62spleen
61lymph node
60__MARKER__
48spinal cord
46esophagus
45thyroid gland
31testis
30ovary
25nerve
24lymphoid tissue
24skeleton
21mouth
20lymphatic vessel
15bronchus
14breast
13bone marrow
13urinary bladder
12tongue
12vagina
5trachea
4nose
3pituitary gland
1embryonic structure
1gallbladder
1pericardium

Life stage

5070adult
1385embryonic
468unknown
458fetal
115child
75newborn
32young adult
30postnatal

Date released

2636February, 2025
2589February, 2021
2511September, 2022
1982July, 2026
373February, 2024
320May, 2026
289June, 2020
286September, 2023
250May, 2021
222November, 2021
155May, 2020
128August, 2021
128March, 2020
106January, 2022
101October, 2022
89January, 2020
70March, 2023
64February, 2020
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
30March, 2024
19April, 2020
14November, 2019
14October, 2019
9August, 2018
9May, 2019
8April, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
2January, 2025
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2558macs
2386r
1035chromhmm
837encode-ccres
abc
139qTLtools
136deltasvm
117deseq2
36cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

11409AMP-T2D consortium
502Kyle Gaulton, UCSD
282Bing Ren, UCSD
281KPMP
98Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

12106AMP
281KPMP
222ENCODE
60T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank
2499EpiMap
1848ChIP-Atlas
1456ENCODE-rE2G
965ENCODE
507DGA
423AMP
421T1D
393HDMA
320pyxis
295T2DKP
281KPMP
219BLUEPRINT
1744DN
151 T2DKP
151GTEx
133CATlas
111T2D
101eQTLCatalogue
100CMDGA
67HPAP
26FNIH_projects-heart
12FNIH_projects-liver
12ROADMAP

RFA

11910AMP