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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1709
candidate regulatory elements
1354
target gene predictions
977
histone modifications
942
chromatin state
817
binding sites
673
gene expression
482
differential activity
397
accessible chromatin
180
eQTL
137
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
4843
cis-regulatory elements
3074
Genetic variant effects
1354
Target gene links
1155
Gene expression levels
2
Others
Annotation type Category
5246
ChIP-seq
2996
DNase-seq
2638
quantitative proteomics
537
RNA-seq
358
ATAC-seq
300
single cell RNA-seq
189
HiC
162
snATAC-seq
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
6084
bed bed3+
3546
tsv
869
bed bed9
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10426
released
1
archived
1
revoked
Genome assembly (visualization)
6465
hg19
1539
GRCh38
4
hg18
Organism
10424
Homo sapiens
Biosample type
5167
tissue
2449
primary cell
2348
cell line
458
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
119
monocyte
89
heart
86
stomach
72
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
endothelial cell
57
muscle of leg
56
large intestine
54
B cell
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
48
thymus
47
CD8-positive, alpha-beta T cell
46
liver
45
right lung
44
macrophage
43
adipocyte
43
hematopoietic multipotent progenitor cell
41
K562
41
natural killer cell
41
right kidney
40
T cell
40
islet of Langerhans
40
smooth muscle cell
39
renal cortex interstitium
39
renal pelvis
36
left kidney
35
spinal cord
33
cardiac muscle cell
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
31
fibroblast
31
heart left ventricle
30
adipose tissue
30
hepatocyte
26
MCF-7
25
regulatory T cell
24
body of pancreas
24
epithelial cell of proximal tubule
24
pancreatic ductal cell
24
retina
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
dendritic cell
22
foreskin keratinocyte
22
neuron
21
EndoC_BH1
21
T-helper 1 cell
21
caudate nucleus
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
psoas muscle
19
T-helper 17 cell
19
foreskin fibroblast
19
keratinocyte
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreas
18
pericyte
18
substantia nigra
18
thyroid gland
18
transverse colon
17
heart right ventricle
17
mast cell
17
muscle of trunk
17
right atrium auricular region
17
subcutaneous adipose tissue
17
testis
16
HepG2
16
chorionic villus
16
coronary artery
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
omental fat pad
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
GM12878
15
cerebellum
15
endothelial cell of lymphatic vessel
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
frontal cortex
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
hepatic stellate cell
13
neurosphere
13
osteoblast
13
putamen
13
temporal lobe
12
endocardial cell
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
skeletal muscle satellite cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pericyte cell
11
retinal pigment epithelial cell
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
astrocyte
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal pelvis
9
skin fibroblast
9
thoracic aorta
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
type B pancreatic cell
7
AG04449 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
Organ
2869
vasculature
2853
bodily fluid
2842
blood
2825
blood vessel
2657
vein
780
epithelium
633
kidney
466
connective tissue
464
brain
370
musculature of body
349
heart
302
lung
278
intestine
244
pancreas
230
limb
213
embryo
199
skin of body
171
large intestine
164
liver
143
extraembryonic component
133
adipose tissue
114
stomach
84
mammary gland
82
small intestine
82
uterus
79
bone element
78
prostate gland
74
artery
73
eye
71
placenta
67
adrenal gland
64
penis
62
lymph node
61
ureter
60
__MARKER__
49
gonad
48
thymus
43
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
19
mouth
16
lymphatic vessel
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
skeleton
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
4952
adult
1372
embryonic
452
unknown
112
child
73
newborn
44
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2576
February, 2021
2507
September, 2022
376
May, 2021
335
February, 2024
320
May, 2026
289
June, 2020
281
September, 2023
128
March, 2020
111
November, 2021
108
August, 2021
102
January, 2022
102
May, 2020
101
October, 2022
70
March, 2023
64
February, 2020
42
May, 2022
40
May, 2024
35
August, 2017
33
July, 2025
33
November, 2022
30
March, 2024
28
January, 2021
24
January, 2020
13
February, 2023
9
August, 2018
8
April, 2019
7
May, 2019
5
October, 2019
4
March, 2026
2
January, 2018
2
January, 2025
2
November, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2020
Software used
2383
r
2102
macs
1033
chromhmm
838
encode-ccres
250
abc
139
qTLtools
132
deltasvm
115
deseq2
33
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9213
AMP-T2D consortium
446
Kyle Gaulton, UCSD
276
KPMP
171
Bing Ren, UCSD
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
33
Katalin Susztak, Upenn
10
Ines Cebola, Imperial College London
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
9987
AMP
276
KPMP
111
ENCODE
32
T1D
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1848
ChIP-Atlas
966
ENCODE
586
DGA
380
T1D
320
pyxis
296
AMP
276
KPMP