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Getting started
Schema
Clear Filters
Annotation type
2974
target gene predictions
2638
pQTL
1709
candidate regulatory elements
1248
accessible chromatin
977
histone modifications
944
chromatin state
816
binding sites
671
gene expression
482
differential activity
180
eQTL
141
variant allelic effects
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Annotation Category
5695
cis-regulatory elements
3006
Genetic variant effects
2974
Target gene links
1153
Gene expression levels
2
Others
Annotation type Category
5247
ChIP-seq
4522
DNase-seq
2638
quantitative proteomics
515
ATAC-seq
463
RNA-seq
460
snATAC-seq
300
single cell RNA-seq
175
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
25
snRNA-seq
17
Expression arrays
17
pCHi-C
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
8023
bed bed3+
3467
tsv
869
bed bed9
546
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
12828
released
1
archived
1
revoked
Genome assembly (visualization)
6885
hg19
3833
GRCh38
4
hg18
Organism
12782
Homo sapiens
Biosample type
5847
tissue
3923
primary cell
2552
cell line
504
in vitro differentiated cells
2
stem cell
Biosample term
2636
whole blood
135
monocyte
109
heart
107
stomach
95
kidney
93
fibroblast
91
endothelial cell
89
brain
86
head of caudate nucleus
84
muscle of arm
82
placenta
81
lung
76
A549
76
adrenal gland
75
small intestine
74
macrophage
73
CD8-positive, alpha-beta T cell
71
muscle of leg
70
large intestine
70
smooth muscle cell
69
muscle of back
68
HeLa-S3
68
T-cell
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
64
CD4-positive, alpha-beta T cell
58
dorsolateral prefrontal cortex
56
right lung
56
thymus
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
right kidney
51
natural killer cell
51
neural progenitor cell
51
renal cortex interstitium
50
renal pelvis
48
K562
48
hepatocyte
48
liver
48
posterior cingulate gyrus
46
adipocyte
45
T cell
45
left kidney
43
retina
42
heart left ventricle
42
islet of Langerhans
41
spinal cord
39
CD14-positive monocyte
38
cardiac muscle cell
38
spleen
37
CD4-positive, alpha-beta memory T cell
33
MCF-7
33
activated CD4-positive, alpha-beta T cell
33
keratinocyte
32
T-helper 1 cell
32
glutamatergic neuron
32
pericyte
31
astrocyte
31
pancreatic ductal cell
30
adipose tissue
28
T-helper 17 cell
28
ovary
28
regulatory T cell
28
trophoblast cell
27
heart right ventricle
27
naive thymus-derived CD4-positive, alpha-beta T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
25
body of pancreas
25
pancreas
25
stimulated activated CD8-positive, alpha-beta memory T cell
25
tibial nerve
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
neuron
24
pericyte cell
23
H9
23
foreskin fibroblast
23
sigmoid colon
23
upper lobe of left lung
22
EndoC_BH1
22
GABAergic neuron
22
HCT116
22
glomerular endothelial cell
22
psoas muscle
22
thyroid gland
21
endothelial cell of umbilical vein
21
testis
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
20
naive thymus-derived CD8-positive, alpha-beta T cell
20
transverse colon
19
HFFc6
19
endocardial cell
19
hepatic stellate cell
18
HepG2
18
coronary artery
18
muscle of trunk
18
pancreatic beta cell
18
tibial artery
17
Peyer's patch
17
embryonic stem cell
17
erythroblast
17
fibroblast of lung
17
mesenchymal stem cell
16
GM12878
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
mast cell
16
pigmented layer of retina
16
right atrium auricular region
16
skeletal muscle satellite cell
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
mammary gland epithelial cell
15
pancreatic acinar cell
15
pancreatic alpha cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
subcutaneous adipose tissue
14
activated CD8-positive, alpha-beta memory T cell
14
ascending aorta
14
endocrine pancreas
14
layer of hippocampus
14
left renal cortex interstitium
14
osteoblast
14
right renal pelvis
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
frontal cortex
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
naive B cell
13
omental fat pad
13
prostate gland
12
SK-N-DZ
12
cerebellum
12
colonic mucosa
12
epithelial cell of prostate
12
left renal pelvis
12
lymphoblastoid cell line
11
IMR-90
11
SK-N-SH
11
aorta
11
choroid plexus epithelial cell
11
esophagus muscularis mucosa
11
neuronal stem cell
11
neurosphere
11
neutrophil
11
progenitor cell of endocrine pancreas
11
thoracic aorta
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
limb
10
neuroblastoma cell
10
putamen
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
SK-N-MC
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
eye
9
globus pallidus
9
kidney tubule cell
9
lower leg skin
9
progenitor cell
9
substantia nigra
9
temporal lobe
9
tongue
8
Ammon's horn
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
Organ
3365
blood
2890
vasculature
2853
bodily fluid
2849
blood vessel
2658
vein
941
epithelium
865
brain
748
kidney
509
connective tissue
473
heart
439
lung
377
musculature of body
356
intestine
310
pancreas
296
skin of body
235
limb
230
liver
225
large intestine
214
embryo
174
extraembryonic component
161
eye
139
stomach
134
adipose tissue
111
muscle organ
106
bone element
104
mammary gland
101
adrenal gland
97
placenta
96
small intestine
93
uterus
92
thymus
87
prostate gland
82
artery
73
ureter
64
penis
63
gonad
62
lymph node
62
spleen
60
__MARKER__
47
esophagus
47
thyroid gland
46
spinal cord
31
ovary
31
testis
24
lymphoid tissue
24
skeleton
22
nerve
21
lymphatic vessel
21
mouth
16
bronchus
15
breast
13
bone marrow
13
pituitary gland
12
tongue
12
urinary bladder
12
vagina
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Life stage
4978
adult
1386
embryonic
463
unknown
457
fetal
114
child
75
newborn
32
young adult
30
postnatal
Date released
2636
February, 2025
2590
February, 2021
2511
September, 2022
1984
July, 2026
389
May, 2021
373
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
281
September, 2023
155
May, 2020
128
August, 2021
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2558
macs
2372
r
1035
chromhmm
838
encode-ccres
250
abc
139
qTLtools
136
deltasvm
115
deseq2
36
cicero
25
seurat
24
chicago
24
gtex_eqtl:V8
18
samtools
15
limix
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
11285
AMP-T2D consortium
501
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
276
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
12120
AMP
333
ENCODE
276
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1848
ChIP-Atlas
1458
ENCODE-rE2G
964
ENCODE
595
DGA
532
AMP
421
T1D
406
T2DKP
393
HDMA
320
pyxis
276
KPMP
219
BLUEPRINT
174
4DN
146
T2DKP
133
CATlas
111
T2D
101
eQTLCatalogue
100
CMDGA
79
GTEx
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
RFA
11924
AMP
333
ENCODE3
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