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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1709
candidate regulatory elements
1357
target gene predictions
976
histone modifications
944
chromatin state
925
accessible chromatin
817
binding sites
684
gene expression
484
differential activity
178
eQTL
141
variant allelic effects
71
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5372
cis-regulatory elements
3073
Genetic variant effects
1357
Target gene links
1168
Gene expression levels
2
Others
Annotation type Category
5247
ChIP-seq
3064
DNase-seq
2638
quantitative proteomics
540
RNA-seq
515
ATAC-seq
460
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
6082
bed bed3+
3546
tsv
869
bed bed9
546
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10970
released
1
archived
1
revoked
Genome assembly (visualization)
6997
hg19
1916
GRCh38
4
hg18
Organism
10924
Homo sapiens
Biosample type
5280
tissue
2864
primary cell
2352
cell line
470
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
92
heart
86
stomach
81
kidney
73
brain
72
endothelial cell
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
B cell
60
placenta
58
muscle of leg
56
large intestine
55
macrophage
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
47
smooth muscle cell
45
T cell
45
adipocyte
45
fibroblast
45
islet of Langerhans
45
right lung
44
natural killer cell
43
hematopoietic multipotent progenitor cell
42
hepatocyte
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
cardiac muscle cell
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
31
pancreatic ductal cell
28
regulatory T cell
26
MCF-7
25
epithelial cell of proximal tubule
25
tibial nerve
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
neuron
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
dendritic cell
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
astrocyte
19
endothelial cell of lymphatic vessel
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
mast cell
18
pancreatic beta cell
18
pericyte
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
hepatic stellate cell
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle satellite cell
16
skeletal muscle tissue
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
endocardial cell
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
pancreatic A cell
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic stellate cell
8
pituitary stalk
8
right renal cortex interstitium
8
skeletal muscle fiber
8
skin fibroblast
8
thoracic aorta
8
type B pancreatic cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
Organ
2905
vasculature
2853
bodily fluid
2848
blood vessel
2842
blood
2658
vein
961
epithelium
669
kidney
521
connective tissue
478
brain
386
musculature of body
371
heart
311
lung
301
pancreas
289
intestine
244
limb
215
embryo
204
skin of body
187
liver
174
large intestine
146
extraembryonic component
138
adipose tissue
119
stomach
109
eye
89
bone element
87
mammary gland
84
small intestine
83
artery
83
uterus
78
prostate gland
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
60
__MARKER__
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
5065
adult
1386
embryonic
468
unknown
115
child
75
newborn
65
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2589
February, 2021
2511
September, 2022
389
May, 2021
373
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
125
March, 2020
105
January, 2022
101
October, 2022
88
January, 2020
70
March, 2023
63
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2557
macs
2385
r
1035
chromhmm
838
encode-ccres
250
abc
138
qTLtools
136
deltasvm
117
deseq2
36
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
23
gtex_eqtl:V8
23
gtex_finemapping_eQTL:caveman
23
gtex_finemapping_eQTL:caviar
23
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9421
AMP-T2D consortium
502
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
10257
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags