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Annotation type
4
candidate regulatory elements
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ATAC-seq
File set status
4
released
Genome assembly (visualization)
4
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
1
artery
1
liver
1
skeletal muscle
1
visceral fat
Organ
1
adipose tissue
1
artery
1
blood vessel
1
connective tissue
1
liver
1
musculature of body
1
vasculature
Life stage
4
adult
Date released
4
October, 2025
Software used
2558
macs
2386
r
1035
chromhmm
838
encode-ccres
250
abc
166
qTLtools
136
deltasvm
133
deseq2
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
dreamlet
8
fastqtl
6
eigenmt
5
peer
5
unknown
4
archr
4
scanpy
4
sce2g
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
4
AMP-T2D consortium
Project
4
AMP
Collection Tags
4
STARNET
RFA
4
AMP
biosample_term_name!
blood cell
Showing 4 of 4 results
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FileSet
DSR388902
released
Annotation file set
: The dataset contains candidate cis-regulatory elements (cCREs) in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR171881
released
Annotation file set
: The dataset contains candidate cis-regulatory elements (cCREs) in human skeletal muscle, derived from STARNET ATAC-seq data (milestone 17).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR003603
released
Annotation file set
: The dataset contains candidate cis-regulatory elements (cCREs) in human liver, derived from STARNET ATAC-seq data (milestone 17).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR673078
released
Annotation file set
: The dataset contains candidate cis-regulatory elements (cCREs) in human artery, derived from STARNET ATAC-seq data (milestone 17).
Lab:
AMP-T2D consortium
Project:
AMP