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Schema
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
bronchial epithelial cell
3
club cell
1
bronchial goblet cell
Organ
2913
vasculature
2859
bodily fluid
2848
blood
2848
blood vessel
2658
vein
946
epithelium
652
kidney
480
connective tissue
467
brain
380
musculature of body
311
lung
289
intestine
277
pancreas
257
heart
244
limb
215
embryo
204
skin of body
174
large intestine
163
liver
146
extraembryonic component
119
stomach
109
eye
99
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
79
artery
78
prostate gland
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
19
mouth
18
skeleton
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
bronchus
4
nose
1
pericardium
Date released
2
November, 2021
1
April, 2020
1
February, 2024
Software used
1
abc
1
deltasvm
1
macs
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
ENCODE
1
AMP
1
LungMap
Collection Tags
2
AMP
2
T2DKP
1
DGA
RFA
2
ENCODE3
1
AMP
1
LungMap2
biosample_term_name!
bronchial epithelial cell
Showing 4 of 4 results
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Download
FileSet
DSR848VTY
released
Annotation file set
: ATAC-seq peaks in club cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR905LLL
released
Annotation file set
: Target gene predictions of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR678WWH
released
Annotation file set
: Accessible chromatin annotation of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR915JYD
released
Annotation file set
: Variant allelic effects annotation of Airway goblet cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP