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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
971
histone modifications
919
accessible chromatin
877
candidate regulatory elements
817
binding sites
684
gene expression
523
target gene predictions
484
differential activity
180
eQTL
141
variant allelic effects
111
chromatin state
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
3696
cis-regulatory elements
3078
Genetic variant effects
1168
Gene expression levels
523
Target gene links
2
Others
Annotation type Category
2744
ChIP-seq
2638
quantitative proteomics
1399
DNase-seq
545
RNA-seq
512
ATAC-seq
456
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
4406
bed bed3+
3551
tsv
542
bigWig
112
txt
40
bigBed bed9
36
bed bed9
34
bed bed9+
26
csv
15
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
1
bam
File set status
8465
released
1
archived
1
revoked
Genome assembly (visualization)
4491
hg19
1082
GRCh38
4
hg18
Organism
8419
Homo sapiens
Biosample type
3910
tissue
2376
primary cell
1810
cell line
365
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
72
endothelial cell
55
HeLa-S3
55
macrophage
51
CD8-positive, alpha-beta T cell
51
H1-hESC
45
fibroblast
44
islet of Langerhans
44
smooth muscle cell
39
adipocyte
39
kidney
39
neural progenitor cell
36
B cell
36
hepatocyte
35
heart
35
natural killer cell
33
T cell
32
cardiac muscle cell
31
pancreatic ductal cell
31
retina
29
stomach
26
liver
25
brain
23
EndoC_BH1
23
K562
22
dendritic cell
22
epithelial cell of proximal tubule
21
neuron
21
pericyte cell
20
adrenal gland
20
breast cancer cell
20
lung
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
CD14-positive monocyte
19
endothelial cell of lymphatic vessel
19
heart left ventricle
19
muscle of arm
19
muscle of leg
18
HFFc6
18
embryonic stem cell
18
glomerular endothelial cell
18
mast cell
18
pericyte
18
placenta
18
regulatory T cell
18
small intestine
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
endocardial cell
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
15
tibial nerve
14
T-helper 1 cell
14
coronary artery
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
caudate nucleus
13
endothelial cell of umbilical vein
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
skeletal muscle satellite cell
12
H9
12
adipose tissue
12
foreskin fibroblast
12
hepatic stellate cell
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T-helper 17 cell
11
body of pancreas
11
erythroblast
11
mesenchymal stem cell
11
omental fat pad
11
putamen
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
frontal cortex
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
10
type B pancreatic cell
9
Ammon's horn
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
ovary
9
pancreatic A cell
9
testis
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
Jurkat
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
leukocyte
7
mature neutrophil
7
memory B cell
7
temporal lobe
6
Chondroid Chordoma
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic D cell
6
plasma cell
6
sigmoid colon
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12865
Organ
2830
vasculature
2788
blood vessel
2778
bodily fluid
2773
blood
2652
vein
810
epithelium
444
kidney
400
connective tissue
305
brain
262
heart
257
pancreas
182
musculature of body
141
liver
134
embryo
125
intestine
114
adipose tissue
106
limb
102
skin of body
101
lung
82
eye
76
large intestine
71
uterus
62
artery
60
__MARKER__
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
18
lymphatic vessel
16
nerve
16
spleen
16
thymus
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Life stage
4014
adult
391
embryonic
168
unknown
65
fetal
32
young adult
30
postnatal
21
newborn
16
child
Date released
2636
February, 2025
2590
February, 2021
September, 2022
389
May, 2021
373
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
63
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2546
macs
838
encode-ccres
720
r
250
abc
202
chromhmm
139
qTLtools
136
deltasvm
117
deseq2
35
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
6917
AMP-T2D consortium
501
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad