Clear Filters

Annotation type

2879target gene predictions
2638pQTL
1709candidate regulatory elements
1221accessible chromatin
939chromatin state
862histone modifications
814binding sites
595gene expression
484differential activity
177eQTL
141variant allelic effects
74Fine-mapped variants
25caQTL
4sQTL
4variant to gene
2other
1representative DNase hypersensitivity sites

Annotation Category

5546cis-regulatory elements
3063Genetic variant effects
2879Target gene links
1079Gene expression levels
2Others

Annotation type Category

5119ChIP-seq
4382DNase-seq
2638quantitative proteomics
464RNA-seq
460snATAC-seq
350ATAC-seq
305single cell RNA-seq
189HiC
133scRNA-seq
84snDropSeq
47pCHi-C
25snRNA-seq
17Expression arrays
5Capture-C
4RNA microarray
1SNP-SELEX

Available data

7778bed bed3+
3463tsv
864bed bed9
533bigWig
112txt
35bigBed bed9
34bed bed9+
26csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls

File set status

12567released
1archived
1revoked

Genome assembly (visualization)

6699hg19
3808GRCh38
4hg18

Organism

12521Homo sapiens

Biosample type

5920tissue
3677primary cell
2491cell line
475in vitro differentiated cells
4stem cell

Biosample term

2636whole blood
110heart
105stomach
95kidney
93fibroblast
89brain
89endothelial cell
86head of caudate nucleus
84muscle of arm
82lung
81placenta
75A549
75adrenal gland
75small intestine
72macrophage
70muscle of leg
69large intestine
69muscle of back
69smooth muscle cell
67HeLa-S3
67left lung
66T-cell
65common myeloid progenitor, CD34-positive
64CD4-positive, alpha-beta T cell
63B cell
59dorsolateral prefrontal cortex
56right lung
56thymus
55stimulated activated CD4-positive, alpha-beta T cell
54hematopoietic multipotent progenitor cell
53H1-hESC
52neural progenitor cell
52right kidney
51hepatocyte
51renal cortex interstitium
50natural killer cell
50renal pelvis
49liver
48posterior cingulate gyrus
47K562
45T cell
45left kidney
44heart left ventricle
43retina
42adipocyte
42islet of Langerhans
40spinal cord
39CD8-positive, alpha-beta T cell
38spleen
37CD4-positive, alpha-beta memory T cell
37cardiac muscle cell
33activated CD4-positive, alpha-beta T cell
32MCF-7
32glutamatergic neuron
32keratinocyte
32pericyte
30T-helper 1 cell
30adipose tissue
30astrocyte
29heart right ventricle
29pancreatic ductal cell
28ovary
28tibial nerve
27body of pancreas
27pancreas
26CD8-positive, alpha-beta memory T cell
26T-helper 17 cell
26epithelial cell of proximal tubule
26regulatory T cell
26trophoblast cell
25stimulated activated CD8-positive, alpha-beta memory T cell
24CD14-positive monocyte
24T-helper 2 cell
24endothelial cell of lymphatic vessel
24foreskin keratinocyte
24neuron
24pericyte cell
24psoas muscle
23caudate nucleus
23gastrocnemius medialis
23naive thymus-derived CD4-positive, alpha-beta T cell
23sigmoid colon
23upper lobe of left lung
22GABAergic neuron
22H9
22HCT116
22foreskin fibroblast
22glomerular endothelial cell
21endothelial cell of umbilical vein
21right atrium auricular region
21testis
21thyroid gland
21tibial artery
20breast cancer cell
20coronary artery
20mononuclear cell
20subcutaneous adipose tissue
19HFFc6
19endocardial cell
19hepatic stellate cell
19mesenchymal stem cell
19omental fat pad
19transverse colon
18HepG2
18ascending aorta
18dendritic cell
18naive thymus-derived CD8-positive, alpha-beta T cell
17Peyer's patch
17frontal cortex
17muscle of trunk
17pancreatic beta cell
16cerebellum
16chorionic villus
16endothelial cell of hepatic sinusoid
16fibroblast of cardiac tissue
16fibroblast of lung
16pigmented layer of retina
16skeletal muscle satellite cell
16substantia nigra
15GM12878
15activated T-cell
15bronchial epithelial cell
15erythroblast
15induced pluripotent stem cell
15mammary gland epithelial cell
15mast cell
15pancreatic alpha cell
15pancreatic delta cell
15retinal pigment epithelial cell
14activated CD8-positive, alpha-beta memory T cell
14aorta
14endocrine pancreas
14layer of hippocampus
14left renal cortex interstitium
14mammary epithelial cell
14right renal pelvis
14skeletal muscle myoblast
14skeletal muscle tissue
13dermis blood vessel endothelial cell
13excitatory neuron
13glomerular visceral epithelial cell
13left cardiac atrium
13naive B cell
13osteoblast
13prostate gland
12Ammon's horn
12SK-N-DZ
12breast epithelium
12colonic mucosa
12fibroblast of dermis
12left renal pelvis
12lymphoblastoid cell line
12monocyte
12pancreatic acinar cell
11choroid plexus epithelial cell
11epithelial cell of prostate
11esophagus muscularis mucosa
11neurosphere
11progenitor cell of endocrine pancreas
11putamen
11thoracic aorta
10IMR-90
10Rhabdomyosarcoma
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10inflammatory macrophage
10limb
10neuroblastoma cell
10neuronal stem cell
10thyroid follicular cell
922Rv1
9GM06990
9SK-N-MC
9SK-N-SH
9WERI-Rb-1
9WI38
9cardiomyocytes
9diffuse intrinsic pontine glioma
9esophagus
9eye
9globus pallidus
9kidney tubule cell
9lower leg skin
9progenitor cell
9temporal lobe
9tongue
8B Cell
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8NAMALWA cell
8PC-9
8T47D
8cingulate gyrus
8colon epithelial cell
8duodenal mucosa
8epithelial cell of esophagus

Organ

3361blood
2899vasculature
2858blood vessel
2849bodily fluid
2658vein
918epithelium
892brain
756kidney
502connective tissue
484heart
436lung
380musculature of body
352intestine
291skin of body
286pancreas
241limb
237liver
221large intestine
208embryo
171extraembryonic component
161eye
139adipose tissue
138stomach
111muscle organ
106bone element
102mammary gland
100adrenal gland
96placenta
96small intestine
92thymus
91uterus
86artery
85prostate gland
73ureter
63gonad
63penis
62spleen
61lymph node
60__MARKER__
48esophagus
48spinal cord
46thyroid gland
31ovary
31testis
25nerve
24lymphoid tissue
24skeleton
21lymphatic vessel
21mouth
16bronchus
14breast
13bone marrow
13urinary bladder
12tongue
12vagina
5trachea
4nose
3pituitary gland
1embryonic structure
1gallbladder
1pericardium

Life stage

4929adult
1386embryonic
468unknown
458fetal
115child
57newborn
32young adult
30postnatal

Date released

2636February, 2025
2586February, 2021
2511September, 2022
1984July, 2026
May, 2021
373February, 2024
333November, 2021
320May, 2026
288June, 2020
286September, 2023
155May, 2020
128August, 2021
128March, 2020
106January, 2022
101October, 2022
89January, 2020
70March, 2023
64February, 2020
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
30March, 2024
19April, 2020
14November, 2019
14October, 2019
9August, 2018
9May, 2019
8April, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
2January, 2025
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2407macs
2296r
1030chromhmm
838encode-ccres
139qTLtools
136deltasvm
111abc
111deseq2
36cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
14hiccups
14matrix-eQTL
12deeptools
12samtools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

11157AMP-T2D consortium
502Kyle Gaulton, UCSD
393Bing Ren, UCSD
281KPMP
98Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

11854AMP
333ENCODE
281KPMP
60T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank
2499EpiMap
1843ChIP-Atlas
1458ENCODE-rE2G
966ENCODE
507AMP
497DGA
406T2DKP
393HDMA
320pyxis
281KPMP
208T1D
1744DN
151GTEx
139 T2DKP
133CATlas
111T2D
101eQTLCatalogue
100