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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
SNP-SELEX
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Biosample term
1
purified protein and synthetic DNA oligo binding assay
Date released
1
February, 2023
Software used
2232
macs
1350
r
chromhmm
356
encode-ccres
222
abc
117
deseq2
88
deltasvm
52
qTLtools
32
cicero
25
chicago
25
seurat
18
samtools
15
limix
12
deeptools
12
umitools
9
rasqual
9
salmon
6
hiccups
6
nospecificsoft_customcode
5
eigenmt
3
minfi
3
sqtlseeker
2
matrix-eQTL
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
cisgenome
1
e-range
1
pepatac
1
unknown
Lab
1
Kyle Gaulton, UCSD
Project
1
T1D
RFA
1
T1D
biosample_term_name!
dermis blood vessel endothelial cell
biosample_type!
tissue
software_used.software.name!
chromhmm
Showing 1 of 1 results
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Download
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D