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Citing CMDGA
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Annotation type
2
target gene predictions
1
variant allelic effects
Annotation Category
2
Target gene links
1
Genetic variant effects
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
1
LNCAP
1
epithelial cell of prostate
1
luminal epithelial cell of prostatic duct
Organ
451
epithelium
178
kidney
119
connective tissue
113
pancreas
67
vasculature
46
blood vessel
39
liver
33
musculature of body
28
intestine
17
lung
16
skin of body
14
brain
13
adrenal gland
13
heart
13
stomach
11
large intestine
10
pituitary gland
9
lymphatic vessel
9
mammary gland
7
artery
7
embryo
6
esophagus
6
extraembryonic component
5
adipose tissue
5
small intestine
4
blood
4
bodily fluid
4
bronchus
4
eye
4
thyroid gland
4
uterus
3
bone element
3
bone marrow
3
gonad
3
limb
3
ovary
3
placenta
3
prostate gland
2
thymus
1
breast
1
lymph node
1
penis
1
spinal cord
1
spleen
1
vein
Date released
2
May, 2021
1
February, 2024
Software used
2
abc
1
deltasvm
Lab
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
biosample_term_name!
dermis blood vessel endothelial cell
lab.title!
AMP-T2D consortium
software_used.software.name!
chromhmm
Showing 3 of 3 results
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Download
FileSet
DSR563FIF
released
Annotation file set
: enhancer-gene predicton of LNCAP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR327KAR
released
Annotation file set
: enhancer-gene predicton of epithelial_cell_of_prostate-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR670LSP
released
Annotation file set
: Variant allelic effects annotation of Luminal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP