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Citing CMDGA
Clear Filters
Annotation type
3
eQTL
2
caQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
3
RNA-seq
2
ATAC-seq
1
Expression arrays
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
2
CD4-positive helper T cell
1
islet of Langerhans
1
nephron tubule
1
renal glomerulus
Organ
2
epithelium
2
kidney
1
pancreas
Life stage
2
adult
Date released
August, 2021
2
February, 2024
2
October, 2022
1
February, 2020
Software used
2481
macs
2332
r
1030
chromhmm
838
encode-ccres
250
abc
136
deltasvm
122
deseq2
116
qTLtools
32
cicero
27
chicago
26
nospecificsoft_customcode
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
12
deeptools
12
umitools
11
rasqual
9
salmon
6
eigenmt
5
matrix-eQTL
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
fastqtl
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
pepatac
1
probabel
1
spp
Lab
3
AMP-T2D consortium
2
Stephen S. Rich Lab @UVA
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
biosample_term_name!
embryonic stem cell
osteosarcoma
month_released!
August, 2021
Showing 5 of 5 results
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Download
FileSet
DSR228CDY
released
Annotation file set
: eQTL annotation of islet of Langerhans from PMID:31253982
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR651LEH
released
Annotation file set
: cis-eQTLs of tubulointerstitial in NEPTUNE cohort
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230KPJ
released
Annotation file set
: cis-eQTLs of glomerular in NEPTUNE cohort
Lab:
AMP-T2D consortium
Project:
AMP