Clear Filters

Annotation type

2637pQTL
2185target gene predictions
1247accessible chromatin
977histone modifications
944chromatin state
876candidate regulatory elements
817binding sites
442differential activity
177eQTL
141variant allelic effects
74Fine-mapped variants
25caQTL
11gene expression
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

4862cis-regulatory elements
3074Genetic variant effects
2185Target gene links
453Gene expression levels
2Others

Annotation type Category

3582ChIP-seq
2855DNase-seq
2637quantitative proteomics
515ATAC-seq
460snATAC-seq
267RNA-seq
189HiC
139H3K27ac ChIP-Seq
110single cell RNA-seq
47pCHi-C
15Expression arrays
13snRNA-seq
5Capture-C
3DNA methylation profiling by array assay
3RNA microarray
1SNP-SELEX

Available data

6397bed bed3+
2878tsv
869bed bed9
545bigWig
40bigBed bed9
34bed bed9+
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
4txt
3bed gappedPeak
3xls
2csv

File set status

10574released
1archived
1revoked

Genome assembly (visualization)

5319hg19
3904GRCh38
4hg18

Organism

10528Homo sapiens

Biosample type

4918tissue
3102primary cell
2180cell line
370in vitro differentiated cells
4stem cell

Biosample term

2635whole blood
120monocyte
93fibroblast
86head of caudate nucleus
81endothelial cell
72macrophage
70CD8-positive, alpha-beta T cell
69heart
68T-cell
68stomach
66smooth muscle cell
64CD4-positive, alpha-beta T cell
62HeLa-S3
60kidney
58dorsolateral prefrontal cortex
56brain
55stimulated activated CD4-positive, alpha-beta T cell
54placenta
52muscle of arm
49lung
48B cell
48adrenal gland
48posterior cingulate gyrus
46small intestine
45muscle of leg
44H1-hESC
44large intestine
43muscle of back
43natural killer cell
41left lung
40A549
40adipocyte
40common myeloid progenitor, CD34-positive
40hepatocyte
37T cell
37neural progenitor cell
36K562
36cardiac muscle cell
36retina
35thymus
34hematopoietic multipotent progenitor cell
34liver
34pericyte
34right lung
33activated CD4-positive, alpha-beta T cell
33heart left ventricle
33renal cortex interstitium
32glutamatergic neuron
32islet of Langerhans
32renal pelvis
32right kidney
31CD14-positive monocyte
29keratinocyte
28astrocyte
28naive thymus-derived CD4-positive, alpha-beta T cell
27left kidney
27spinal cord
27stimulated activated CD8-positive, alpha-beta memory T cell
26spleen
25pancreas
24endothelial cell of lymphatic vessel
23MCF-7
23dendritic cell
23neuron
22GABAergic neuron
22heart right ventricle
22pericyte cell
21H9
21pancreatic ductal cell
20HCT116
20breast cancer cell
20ovary
20pigmented layer of retina
20tibial nerve
19CD4-positive, alpha-beta memory T cell
19HFFc6
19T-helper 1 cell
19endocardial cell
19foreskin fibroblast
19naive thymus-derived CD8-positive, alpha-beta T cell
18endothelial cell of umbilical vein
17HepG2
17adipose tissue
17body of pancreas
17embryonic stem cell
17erythroblast
17mast cell
17psoas muscle
17retinal pigment epithelial cell
17trophoblast cell
17upper lobe of left lung
16T-helper 2 cell
16caudate nucleus
16coronary artery
16endothelial cell of hepatic sinusoid
16foreskin keratinocyte
16gastrocnemius medialis
16hepatic stellate cell
16tibial artery
15EndoC_BH1
15T-helper 17 cell
15activated T-cell
15mammary epithelial cell
15sigmoid colon
15subcutaneous adipose tissue
15testis
14GM12878
14activated CD8-positive, alpha-beta memory T cell
14mesenchymal stem cell
14regulatory T cell
14right atrium auricular region
14thyroid follicular cell
14thyroid gland
13neuronal stem cell
13omental fat pad
13osteoblast
13putamen
13skeletal muscle myoblast
13transverse colon
12ascending aorta
12excitatory neuron
12left renal cortex interstitium
12lymphoblastoid cell line
12muscle of trunk
12neuroblastoma cell
12pancreatic beta cell
12right renal pelvis
12skeletal muscle satellite cell
12substantia nigra
11CD8-positive, alpha-beta memory T cell
11Peyer's patch
11fibroblast of lung
11frontal cortex
11left cardiac atrium
11left renal pelvis
11naive B cell
11neutrophil
11pancreatic acinar cell
11progenitor cell
11type B pancreatic cell
10Ammon's horn
10Rhabdomyosarcoma
10bronchial epithelial cell
10cerebellum
10gastric cancer cell
10mesothelial cell
10pancreatic alpha cell
10prostate gland
9choroid plexus epithelial cell
9diffuse intrinsic pontine glioma
9layer of hippocampus
9liposarcoma
9megakaryocyte
9oligodendrocyte
9pancreatic A cell
9pancreatic delta cell
9right lobe of liver
9right renal cortex interstitium
8IMR-90
8aorta
8breast epithelium
8colonic mucosa
8dermis blood vessel endothelial cell
8epithelial cell of prostate
8fibroblast cell line
8fibroblast of cardiac tissue
8foreskin melanocyte
8inflammatory macrophage
8mammary gland epithelial cell
8pituitary stalk
8skeletal muscle tissue
7B-lymphoblastoid cell line
7HAP-1
7MG63
7PC-9
7SK-N-MC
7SK-N-SH
7WERI-Rb-1
7cell of skeletal muscle
7esophageal adenocarcinoma
7lymphocyte
7mature neutrophil
7medium spiny neuron
7memory B cell
7mesendoderm
7muscle precursor cell
7oligodendrocyte precursor cell
7temporal lobe
7thoracic aorta
7tongue
7uterus
622Rv1
6B Cell
6Chondroid Chordoma
6GM19240
6HEK293
6HL-60
6HUES8
6Jurkat
6LNCAP

Organ

3318blood
2819vasculature
2801bodily fluid
2799blood vessel
2654vein
764brain
585epithelium
404kidney
394heart
383connective tissue
299lung
245intestine
239musculature of body
226skin of body
213pancreas
193liver
158large intestine
151embryo
147limb
142eye
113adipose tissue
111muscle organ
108extraembryonic component
92stomach
83uterus
76mammary gland
74bone element
73adrenal gland
71thymus
68artery
65placenta
60__MARKER__
60prostate gland
59small intestine
50spleen
47ureter
46gonad
46lymph node
44penis
38thyroid gland
32esophagus
32spinal cord
23ovary
22testis
18skeleton
17nerve
14lymphatic vessel
13lymphoid tissue
12bronchus
12mouth
12pituitary gland
11bone marrow
10breast
8urinary bladder
7tongue
7vagina
5trachea
2nose
1embryonic structure
1gallbladder

Life stage

3934adult
710embryonic
421fetal
234unknown
48child
39newborn
32young adult
30postnatal

Date released

2636February, 2025
2413February, 2021
1984July, 2026
846September, 2022
333November, 2021
320May, 2026
307February, 2024
299May, 2021
289June, 2020
155May, 2020
117March, 2020
115September, 2023
106January, 2022
101October, 2022
75August, 2021
71January, 2020
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
26February, 2020
19April, 2020
15March, 2023
14November, 2019
14October, 2019
9May, 2019
8April, 2019
4March, 2026
3September, 2018
2January, 2025
2November, 2020
1August, 2020
1August, 2022
1June, 2021

Software used

2557macs
r
1035chromhmm
838encode-ccres
250abc
139qTLtools
136deltasvm
117deseq2
36cicero
27chicago
27nospecificsoft_customcode
25seurat
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

9296AMP-T2D consortium
447Kyle Gaulton, UCSD
393Bing Ren, UCSD
139Jesse Engreitz, Stanford University
110KPMP
86Stephen Parker, UMich
24Ines Cebola, Imperial College London
21Katalin Susztak, Upenn
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
3Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

10032AMP
333ENCODE
110KPMP
60T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank
1848ChIP-Atlas
1458ENCODE-rE2G
938ENCODE
833EpiMap
438DGA
425AMP
402T2DKP
393HDMA
327T1D
320pyxis
181BLUEPRINT
1744DN
133CATlas
130 T2DKP
111T2D
110KPMP
101eQTLCatalogue
100CMDGA
96GTEx
26FNIH_projects-heart