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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1709
candidate regulatory elements
1339
target gene predictions
968
histone modifications
941
chromatin state
871
accessible chromatin
815
binding sites
685
gene expression
484
differential activity
180
eQTL
74
Fine-mapped variants
62
variant allelic effects
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
2
other
1
representative DNase hypersensitivity sites
Annotation Category
5305
cis-regulatory elements
2999
Genetic variant effects
1339
Target gene links
1169
Gene expression levels
1
Others
Annotation type Category
5234
ChIP-seq
2995
DNase-seq
2638
quantitative proteomics
546
RNA-seq
460
snATAC-seq
451
ATAC-seq
305
single cell RNA-seq
188
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
31
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
5938
bed bed3+
3551
tsv
866
bed bed9
493
bigWig
112
txt
37
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10812
released
1
archived
Genome assembly (visualization)
6853
hg19
1910
GRCh38
4
hg18
Organism
10811
Homo sapiens
Biosample type
5227
tissue
2778
primary cell
2339
cell line
463
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
132
monocyte
89
heart
86
stomach
80
kidney
72
brain
72
endothelial cell
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
57
B cell
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
macrophage
54
muscle of back
52
left lung
51
neural progenitor cell
48
CD8-positive, alpha-beta T cell
48
liver
47
smooth muscle cell
47
thymus
45
T cell
45
adipocyte
45
fibroblast
45
right lung
43
hematopoietic multipotent progenitor cell
43
natural killer cell
42
islet of Langerhans
41
K562
41
hepatocyte
40
right kidney
39
renal cortex interstitium
39
renal pelvis
39
retina
36
left kidney
35
spinal cord
34
cardiac muscle cell
34
spleen
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
31
pancreatic ductal cell
30
adipose tissue
26
MCF-7
26
regulatory T cell
24
epithelial cell of proximal tubule
24
pericyte cell
23
body of pancreas
23
neuron
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
dendritic cell
22
foreskin keratinocyte
21
T-helper 1 cell
21
caudate nucleus
21
keratinocyte
21
trophoblast cell
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pancreas
20
pigmented layer of retina
20
psoas muscle
20
tibial nerve
19
T-helper 17 cell
19
astrocyte
19
endothelial cell of lymphatic vessel
19
foreskin fibroblast
19
mesenchymal stem cell
19
subcutaneous adipose tissue
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
gastrocnemius medialis
18
heart right ventricle
18
mast cell
18
pancreatic beta cell
18
pericyte
18
substantia nigra
18
thyroid gland
18
transverse colon
17
HepG2
17
endothelial cell of umbilical vein
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle satellite cell
16
skeletal muscle tissue
15
GM12878
15
cerebellum
15
endocardial cell
15
hepatic stellate cell
15
mammary gland epithelial cell
15
pancreatic delta cell
15
tibial artery
14
H9
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
frontal cortex
14
neutrophil
14
prostate gland
14
skeletal muscle myoblast
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
putamen
12
CD4-positive, alpha-beta T cell
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
choroid plexus epithelial cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
pancreatic A cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
8
type B pancreatic cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
Organ
2890
vasculature
2853
bodily fluid
2842
blood
2837
blood vessel
2656
vein
946
epithelium
650
kidney
511
connective tissue
466
brain
381
musculature of body
360
heart
311
lung
295
pancreas
289
intestine
234
limb
215
embryo
204
skin of body
184
liver
174
large intestine
146
extraembryonic component
135
adipose tissue
119
stomach
107
eye
88
bone element
87
mammary gland
84
small intestine
83
uterus
78
artery
78
prostate gland
73
adrenal gland
73
placenta
64
penis
62
lymph node
61
ureter
60
__MARKER__
50
gonad
48
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
22
nerve
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
5048
adult
1379
embryonic
467
unknown
115
child
73
newborn
60
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2579
February, 2021
2511
September, 2022
389
May, 2021
373
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2547
macs
2386
r
1032
chromhmm
838
encode-ccres
250
abc
139
qTLtools
117
deseq2
57
deltasvm
36
cicero
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
chicago
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9263
AMP-T2D consortium
501
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
10098
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1837
ChIP-Atlas
964
ENCODE
559
DGA
533
AMP
406
T2DKP
404
T1D
320
pyxis