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Citing CMDGA
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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
2
10X snRNA-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
39
h5ad
5
mtx
5
tsv
2
rds
bed bed3
1
cloupe
1
tbi
File set status
4
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
skeletal muscle tissue
1
heart
1
tissues
Tissue term
2
skeletal muscle tissue
1
heart
1
tissues
Organ
2
musculature of body
1
heart
Life stage
1
adult
Date released
2
May, 2022
1
February, 2023
1
November, 2021
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
biosample_term_name!
immune system
files.file_type!
bed bed3
organ_slims!
thymus
Showing 4 of 4 results
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FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE