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Schema
Clear Filters
Annotation type
5
eQTL
2
caQTL
Annotation Category
7
Genetic variant effects
Annotation type Category
5
RNA-seq
2
ATAC-seq
1
Expression arrays
1
RNA microarray
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
islet of Langerhans
2
CD4-positive helper T cell
1
kidney
1
nephron tubule
1
renal glomerulus
1
skeletal muscle tissue
1
subcutaneous adipose tissue
Organ
3
kidney
2
epithelium
1
adipose tissue
1
connective tissue
1
musculature of body
Life stage
3
adult
1
unknown
Date released
3
August, 2021
2
October, 2022
1
February, 2020
1
February, 2024
Software used
2539
macs
2373
r
1032
chromhmm
838
encode-ccres
250
abc
139
qTLtools
135
deltasvm
133
deseq2
32
cicero
27
nospecificsoft_customcode
26
chicago
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
12
deeptools
12
umitools
11
rasqual
9
salmon
7
matrix-eQTL
6
eigenmt
6
fastqtl
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
Lab
4
AMP-T2D consortium
2
Stephen S. Rich Lab @UVA
1
Katalin Susztak, Upenn
Project
5
AMP
2
T1D
Collection Tags
2
AMP
2
T1D
2
T2DKP
1
DGA
RFA
4
AMP
2
T1D
1
AMP2
biosample_term_name!
islet of Langerhans
Showing 7 of 7 results
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Download
FileSet
DSR513VNX
released
Annotation file set
: eQTL annotation of subcutaneous adipose tissue from PMID:29632379
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR817XBR
released
Annotation file set
: eQTL annotation of skeletal muscle tissue from PMID:27353450
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR651LEH
released
Annotation file set
: cis-eQTLs of tubulointerstitial in NEPTUNE cohort
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230KPJ
released
Annotation file set
: cis-eQTLs of glomerular in NEPTUNE cohort
Lab:
AMP-T2D consortium
Project:
AMP