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Schema
Citing CMDGA
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Annotation type
3
target gene predictions
1
chromatin state
1
eQTL
1
gene expression
Annotation Category
3
Target gene links
1
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
2
RNA-seq
1
ChIP-seq
Available data
4
bed bed3+
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
3
subcutaneous adipose tissue
1
adipose tissue
1
beige adipocyte
1
white adipose tissue
Organ
454
epithelium
178
kidney
125
connective tissue
115
pancreas
68
vasculature
47
blood vessel
41
liver
36
musculature of body
32
intestine
19
brain
18
heart
18
lung
17
skin of body
14
large intestine
14
stomach
13
adrenal gland
10
mammary gland
10
pituitary gland
9
lymphatic vessel
8
embryo
7
artery
6
adipose tissue
6
blood
6
bodily fluid
6
esophagus
6
extraembryonic component
6
small intestine
4
bronchus
4
eye
4
thyroid gland
4
uterus
3
bone element
3
bone marrow
3
gonad
3
limb
3
ovary
3
placenta
3
prostate gland
2
thymus
2
vein
1
breast
1
lymph node
1
penis
1
spinal cord
1
spleen
Life stage
2
adult
Date released
3
May, 2021
2
February, 2021
1
August, 2017
Software used
3
abc
1
chromhmm
1
fastqtl
1
r
Lab
AMP-T2D consortium
3
Jesse Engreitz, Stanford University
2
Karen Mohlke, UNC
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_term_name!
layer of hippocampus
disease_term_name!
adenoid cystic carcinoma
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
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Download
FileSet
DSR306BCP
released
Annotation file set
: Gene expression annotation of subcutaneous adipose tissue for GSE135134
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR965YTD
released
Annotation file set
: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR719JYF
released
Annotation file set
: enhancer-gene predicton of white_adipose-Loft2014 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR405NVR
released
Annotation file set
: enhancer-gene predicton of brite_adipose-Loft2014 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR255DSD
released
Annotation file set
: enhancer-gene predicton of adipose_tissue-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR804392
released
Annotation file set
: ChromHMM 13-state model for Adipose
Lab:
Stephen Parker, UMich
Project:
AMP